Table 1.
Oligonucleotides used for PCRs
Sequence name | Primer | Primer sequence | Amplicon length (bp) | Reference |
---|---|---|---|---|
247N galK | 247N-L-galKF | 5′-AAGAAGTTGCAAGTCTCTCATCTGATAGCATAGTAAAAATCAGTTCAGTACCTGTTGACAATTAATCATCGGCA-3′ | 1,331 | |
247N-R-galKR | 5′-TAAGTACTGATGGCTTGTCTTGTGTCACGATAGTTTAGAAAAAATCTGTATCAGCACTGTCCTGCTCCTT-3′ | 1,331 | ||
247N luc | 247N-L-lucF | 5′-AAGAAGTTGCAAGTCTCTCATCTGATAGCATAGTAAAAATCAGTTCAGTACGGTACCGAGATCTGCGATCTGC-3′ | 3,546 | |
247N-R-lucR | 5′-TAAGTACTGATGGCTTGTCTTGTGTCACGATAGTTTAGAAAAAATCTGTACGATTTTACCACATTTGTAGAGG-3′ | 3,546 | ||
ORF3 | ORF3F | 5′-GGGCTAATTTGTGCAGTTTGTGA-3′ | 111 | 40 |
ORF3R | 5′-AGGTGTTTCTGAAAAGAGGGGAA-3′ | 111 | 40 | |
Beta-globin | GLOBF | 5′-GGTATCCTTTTTACAGCACAAC-3′ | 178 | 43 |
GLOBR | 5′-CAGGTCCCCAAAGGACTCG-3′ | 178 | 43 | |
247N | pre-247Nluc | 5′-CATTTTAAAATAGCTTGTCGGG-3′ | 568 | |
post-247Nluc | 5′-GACATGGTCTTCTGTTAAAGTC-3′ | 568 | ||
ORF73 | ORF73F | 5′-GGACTAGACCCTCTTTATGACCC-3′ | 244 | 12 |
ORF73R | 5′-GCAATGGGTTCCTATTTTGCTCG-3′ | 244 | 12 | |
ORF50 | C500-3 | 5′-TCTGGCCCGTGCTGCAGCAAGACTCTCAG-3′ | 274 | 23 |
C500-4 | 5′-TATAGTAGAATCCCGTCTGAGTGGTAGCTG-3′ | 274 | 23 | |
ORF25 | ORF25F | 5′-GGCCGATGTGGCCTATTTTC-3′ | 465 | |
ORF25R | 5′-TCGTCCAAGAGTACACGGTG-3′ | 465 | ||
luc | luc-int F | 5′-GCCATTCTATCCGCTGGAAG-3′ | 641 | |
luc-int R | 5′-TAGGATCTCTGGCATGCGAG-3′ | 641 | ||
HPRT | HPRT-F | 5′-TGATAGATCCATTCCTATGACTGTAGA-3′ | 265 | 19 |
HPRT-R | 5′-GGGTCCTTTTCACCAGCAG-3′ | 265 | 19 |