Table 2.
Gene loci identified as being under intragenic homologous recombination by two or more of the four substitution analysis methods implemented in this study.
| Locus Tag | Locus | Gene Annotation | Recombination Method |
|---|---|---|---|
| CT674 | yscC | Type III secretion structural protein (outer membrane ring) | NSS, MaxChi GeneCon, PHI |
| CT679 | tsf | elongation factor Ts | NSS, MaxChi GeneCon, PHI |
| CT681 | ompA | major outer membrane protein | NSS, MaxChi GeneCon, PHI |
| CT869 | pmpE | polymorphic outer membrane protein | NSS, MaxChi GeneCon, PHI |
| CT870 | pmpF | polymorphic outer membrane protein | NSS, MaxChi GeneCon, PHI |
| CT872 | pmpH | polymorphic outer membrane protein | NSS, MaxChi GeneCon, PHI |
| CT049 | - | hypothetical protein | NSS, MaxChi GeneCon, PHI |
| CT144 | - | hypothetical protein | NSS, MaxChi GeneCon, PHI |
| CT675 | karG | ATP:guanido phosphotransferase | GeneCon, NSS, MaxChi |
| CT682 | pbpB | penicillin-binding protein | GeneCon, NSS, MaxChi |
| CT686 | - | hypothetical protein | NSS, MaxChi, PHI |
| CT456 | - | Translocated actin-recruiting phosphoprotein (tarp protein) | NSS, MaxChi, GeneCon |
| CT619 | - | hypothetical protein | NSS, MaxChi, GeneCon |
| CT640 | recC | exodeoxyribonuclease V gamma chain | NSS, MaxChi |
| CT643 | topA | DNA topoisomerase I/SWI domain fusion protein | MaxChi, GeneCon |