Table 4.
Relative transcription ratios under mycoparasitic conditions
| ID | Ratio (95% confidence interval)d |
Ratio (95% confidence interval)d |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Before contact (bc) |
Contact (c) |
Contact (c) |
Contact/contact before (c/bc) |
|||||||
| TPa/TT | TBb/TT | TRc/TT | TP/TT | TB/TT | TR/TT | TP | TB | TR | TT | |
| 297887 | 0.09 (0.04, 0.18) | 0.14 (0.02, 1.27) | 0.11 (0.04, 0.23) | 0.03 (0.01, 0.06) | 0.06 (0.03, 0.18) | 0.05 (0.03, 0.11) | 1.63 (0.88, 2.75) | 2.67 (0.33, 24.05) | 3.10 (2.08, 4.18) | 5.67 (1.84, 15.46) |
| 80187 | 107.72 (90.0, 128.8) | 84.18 (72.8, 98.0) | 98.16 (81.0, 120.9) | 2.19 (1.79, 2.67) | 0.78 (0.60, 1.04) | 1.36 (0.97, 1.78) | 1.22 (1.08, 1.38) | 0.46 (0.39, 0.56) | 0.68 (0.51, 0.84) | 46.55 (36.3, 59.9) |
| 286914 | 1.04 (0.86, 1.28) | 2.13 (1.56, 3.01) | 2.18 (1.77, 2.80) | 2.19 (1.17, 4.09) | 9.53 (5.21, 16.55) | 5.85 (3.23, 10.06) | 0.87 (0.76, 1.06) | 1.54 (1.19, 1.93) | 1.09 (0.93, 1.21) | 0.38 (0.20, 0.74) |
| 149807 | 0.23 (0.13, 0.39) | 0.43 (0.33, 0.58) | 0.26 (0.07, 0.63) | 0.82 (0.55, 1.23) | 0.63 (0.36, 1.13) | 0.94 (0.62, 1.37) | 1.97 (1.20, 4,07) | 0.75 (0.41, 1.46) | 1.98 (0.70, 8.25) | 0.54 (0.45, 0.71) |
| 223683 | 1.28 (0.77, 2.01) | 0.54 (0.28, 0.93) | 0.46 (0.26, 0.89) | 0.58 (0.25, 1.34) | 0.62 (0.23, 1.53) | 0.31 (0.08, 0.99) | 0.16 (0.12, 0.24) | 0.39 (0.19, 0.75) | 0.23 (0.08, 0.48) | 0.34 (0.14, 0.91) |
| 211243 | 0.36 (0.21, 0.71) | 0.44 (0.15, 1.27) | 0.52 (0.32, 0.94) | 0.89 (0.40, 2.04) | 1.96 (0.98, 3.82) | 0.88 (0.33, 2.49) | 0.94 (0.61, 1.65) | 1.64 (0.74, 3.86) | 0.63 (0.34, 1.26) | 0.37 (0.2, 1.0) |
| 298187 | 16.21 (10.96, 22.4) | 18.82 (12.0, 28.57) | 8.92 (5.74, 13.60) | 0.77 (0.45, 1.29) | 215.19 (132, 344.7) | 14.44 (6.16, 31.80) | 0.09 (0.07, 0.12) | 22.78 (17.1, 29.67) | 3.17 (1.58, 5.77) | 1.98 (1.07, 3.65) |
| 318101 | 0.02 (0.01, 0.05) | 0.74 (0.43, 1.37) | 2.96 (1.67, 5.54) | 0.03 (0.02, 0.05) | 0.23 (0.16, 0.34) | 0.92 (0.63, 1.39) | 10.20 (3.48, 29.93) | 1.95 (1.40, 2.74) | 1.77 (1.23, 2.61) | 5.81 (3.23, 11.03) |
| 132506 | 0.16 (0.05, 0.37) | 0.33 (0.15, 0.56) | 0.92 (0.37, 2.21) | 0.32 (0.21, 0.55) | 0.50 (0.34, 0.79) | 2.12 (1.49, 3.30) | 0.98 (0.48, 2.44) | 0.71 (0.50, 0.99) | 1.07 (0.57, 1.62) | 0.48 (0.21, 0.83) |
| 302587 | 13.95 (12.3, 15.82) | 3.86 (2.22, 5.14) | 2.39 (1.95, 2.99) | 2.98 (0.36, 3.84) | 0.24 (0.18, 0.31) | 0.42 (0.28, 0.61) | 0.17 (0.15, 0.19) | 0.05 (0.04, 0.09) | 0.15 (0.10, 0.21) | 0.78 (0.60, 0.96) |
| 84753 | 137.08 (98.9, 172.2) | 96.32 (66.0, 126.3) | 59.04 (43.2, 73.8) | 8.06 (6.06, 9.93) | 1.33 (1.04, 1.69) | 1.56 (0.96, 2.59) | 0.60 (0.49, 0.71) | 0.13 (0.11, 0.17) | 0.27 (0.18, 0.42) | 10.32 (7.15, 14.39) |
| 22871 | 1.14 (0.90, 1.33) | 1.93 (1.46, 2.40) | 0.84 (0.50, 1.17) | 1.36 (1.02, 1.98) | 0.95 (0.68, 1.50) | 2.00 (1.35, 3.17) | 1.17 (1.04, 1.28) | 0.48 (0.38, 0.61) | 2.21 (1.49, 3.66) | 0.91 (0.57, 1.28) |
a
Plate confrontation assays of T. atroviride with P. capsici.
b
Plate confrontation assays of T. atroviride with B. cinerea.
c
Plate confrontation assays of T. atroviride with R. solani.
d
Numbers in parentheses indicate 95% confidence intervals for the relative expression levels calculated by REST2008. PCR amplification efficiencies of all reactions were in the range of 100% ± 8%.