Table 2.

P. placenta genes encoding transcripts with >2-fold accumulation and detectable extracellular proteins^a

ID	Description	P. placenta								P. chrysosporium homologs
		Signal (log2)			A/P ratio	P value	No. of unique peptidesc			No. of homologs	ID	Description	Signal (log2)		A/P ratio	P value	No. of unique peptides
		G	A	P			A	P	G				A	P			A	P	G
128867	Hypothetical	127765	12.73	9.88	8.37	<0.01	1	4	5
113186b	Hypothetical	130016	13.17	10.40	6.80	<0.01	10 [14]	11 [13]	11 [12]	0
121916b	Hypothetical	None	13.77	11.51	4.79	<0.01	10	11	11	0
56703	CRO5	99632	13.79	11.70	4.25	<0.01	6	7	0	3	8882	cro4	12.45	11.83	1.54	0.23	0	0	0
129055	Hypothetical		13.18	11.58	3.04	<0.01	2	3	9	0
64088	Peptidase A	57301	11.54	10.10	2.71	<0.01	[1]	[2]	[1]	18	135608	asp1	10.84	10.60	1.18	0.59	9	9	12
112047	GH92	116992	13.07	11.96	2.16	<0.01	10 [2]	10 [2]	9 [0]	3	3431	GH92	13.18	12.87	1.24	0.43	0	0	0
111730	GH28	43189	12.11	13.17	0.48	<0.01	[2]	[5]	[2]	1	3805	epg28	14.59	11.93	6.30	0.07	10	6	4
58192	GH28	45730	11.57	12.64	0.48	<0.01	[0]	[2]	[0]	1	29397	rhg28	13.43	12.27	2.23	0.25	5	3	0

^aCalculations are as described in the footnotes to Table 1. To identify P. chrysosporium homologs, the 12,438 P. placenta protein models represented on microarrays were aligned with all 10,048 v2 P. chrysosporium protein models by using Timelogic (Active Motif, Carlsbad, CA) hardware accelerated double-affinity Smith-Waterman alignments as previously described (57).

^bGene models lie adjacent on scaffold 67 and are predicted to encode identical proteins. Transcripts differed only slightly, suggesting a possible assembly error.

^cComplete MS/MS results are listed in Table S2 in the supplemental material. Only proteins with 2 or more peptides in BMP and/or BMA are listed.