Table 2. Results of genome-wide significant SNPs for total white blood cell count.
Chromosome | Number SNPS with P<2.5×10−8 | Top SNP in region | Position | Candidate gene | Minor/Major allele | Minor allele frequency | Effect size (Standard Error) | P-value |
1q23 | >10,000 | rs2814778 | 157441307 | DARC | T/C | 0.21 | +0.230 (0.005) | 1.0×10−524 |
4q13 | 1 | rs9131 | 75181913 | CXCL2 | T/C | 0.23 | −0.023 (0.004) | 1.6×10−8 |
16q22 | 14 | rs12149261 | 69555646 | HYDIN | A/C | 0.25 | +0.083 (0.005) | 3.5×10−75 |
For each locus, the lead SNP with the smallest P-values among the genotyped or imputed SNPs are indicated. Effect size represents the effect of a minor allele on natural log-transformed white blood cell count. Positions of the SNPs were derived from dbSNP build 136.