Table 3.
PCR type | Step | Conditions |
---|---|---|
Multiplex-PCR | Initial denaturation | 98°C for 30 s |
Thermocycling: 35 cycles | 98°C for 10 s | |
55°C for 20 s | ||
72°C for 20 s | ||
Extension | 72°C for 15 s | |
Nested conventional PCR | Initial denaturation | 98°C for 30 s |
Thermocycling: 35 cycles | 98°C for 10 s | |
Ta⁎ for 30 s | ||
72°C for 10 s | ||
Nested fast-COLD-PCR | Initial denaturation | 98°C for 30 s |
Stage 1 cycling: 5 cycles | 98°C for 10 s | |
Ta⁎ for 20 s, fluorescent reading | ||
72°C for 10 s | ||
Stage 2 cycling: 20 cycles | Tc⁎ for 10 s | |
Ta⁎ for 20 s, fluorescent reading | ||
72°C for 10 s | ||
Stage 3 cycling: 10 cycles | 98°C for 10 s | |
Ta⁎ for 20 s, fluorescent reading | ||
72°C for 10 s | ||
Melting curve | Ramping 0.2°C/s, 60°C to 90°C |
Annealing temperatures and critical denaturation temperatures are defined in Table 2.