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. 2011 Jul 1;6(7):e20853. doi: 10.1371/journal.pone.0020853

Figure 1. Illustration of the caterpillar model.

Figure 1

The large transparent spheres represent the self-avoidance volume, which has a radius of Inline graphic, associated to an amino acid and centered on the position of the Inline graphic atoms. The backbone degrees of freedom are the torsional angles Inline graphic and Inline graphic. In order to describe hydrogen bonds also the backbone amide (NH) and the carboxyl (CO) groups are explicitly represented.