. 2010 Jun 24;20(2):289–300. doi: 10.1089/scd.2009.0444

Table 1.

Genes of Interest Upregulated in Cocultures

	Symbol	ID	Expression ratio
Rat neural stem cell genes
Differentiation
Glial fibrillary acidic protein	Gfap	24387	44.8^a
Bone morphogenetic protein 4	Bmp4	25296	2.7
Meteorin	Metrn	287151	2.2
Notch signaling
Delta-like 1	Dll1	84010	2.5^b
Intracellular signaling/transcription factors
Lymphoid enhancer binding factor 1	Lef1	161452	4.1
Tribbles homolog 1	Trib1	78969	4.0^b
Protein tyrosine phosphatase N	Ptprn	116660	3.4
Protein tyrosine phosphatase 5	Ptpn5	29644	2.7^b
Protein kinase C eta	Prkch	81749	2.5
Early growth response 1	Egr1	24330	2.3
Signan transducer and activator of transcription 3	Stat3	25125	2.1
Myelin related proteins
Discoidin domain receptor family 1	Ddr1	25678	2.3
Plasma membrane proteolipid	Pllp	64364	2.2
Gelsolin	Gsn	296654	2.2
Regulators in development
Reelin	Reln	24718	7.5
Netrin 1	Ntn1	114523	2.6
Chondroitin sulfate proteoglycan 2	Cspg2	114122	2.1
Human mesenchymal stromal cell genes
Notch signaling
Hairy and enhancer of split 1	HES1	3280	5.4
Notch homolog 3	NOTCH3	4854	5.0
Jagged 1	JAG1	182	4.2
SMAD family member 3	SMAD3	4088	2.7
Secreted factors
Bone morphogenetic protein 1	BMP1	649	3.3
Hepatocyte growth factor	HGF	3082	3.2
Transforming growth factor beta 3	TGFB3	7043	3
Transforming growth factor beta 1	TGFB1	7040	2.4
Cell surface receptors
Thy-1 cell surface antigen	THY1	7070	2.3
KIT ligand	KITLG	4254	2.3
Glypican 1	GPC1	2817	2.3

^{^a}

Using a 90% confidence interval, change in transcript expression was not found to be significant due to high variance between individual perfect match and mismatch probes. Signal absent in NSCs alone.

^{^b}

Signal absent in NSCs alone.

NSC, neural stem cell.