Table 2.
List of Bacteroidetes with a fully sequenced and published genome, and their respective habitats.
| Species | Genome size (CDS number) | Habitat (functional role) | Reference |
|---|---|---|---|
| FLAVOBACTERIA CLASS | |||
| Capnocytophaga ochracea DSM 7271 | 2.6 Mb (2193) | Animals and humans (S/P) | Mavrommatis et al. (2009) |
| Gramella forsetii KT0803 | 3.8 Mb (3585) | North Sea surface water | Bauer et al. (2006) |
| during phytoplankton bloom (E) | |||
| Robiginitalea biformata HTCC2501 | 3.5 Mb (3211) | Sargasso Sea (E) | Oh et al. (2009) |
| Flavobacterium johnsoniae UW101 | 6.1 Mb (5056) | Soil and freshwater (E) | McBride et al. (2009) |
| Flavobacterium psychrophilum JIP02/86 | 2.9 Mb (2432) | Fish (P) | Duchaud et al. (2007) |
| Croceibacter atlanticus HTCC2559 | 3.0 Mb (2715) | Sargasso Sea (E) | Oh et al. (2010) |
| Zunongwangia profunda SM-A87 | 5.1 Mb (4653) | Deep-sea sediments (E) | Qin et al. (2010) |
| Candidatus Sulcia muelleri GWSS | 0.3 Mb (228) | Sap-feeding insects flora (S) | McCutcheon and Moran (2007) |
| Maribacter sp. HTCC2170 | 3.9 Mb (3411) | Surface sea water, Oregon coast (E) | Oh et al. (2011) |
| Periplaneta americana | 0.6 Mb (581) | Cockroach endosymbiont (S) | Sabree et al. (2009) |
| Blattella germanica | 0.6 Mb (586) | Cockroach endosymbiont (S) | Lopez-Sanchez et al. (2009) |
| Polaribacter dokdonensis MED152 | 3.0 Mb (2646) | Northwestern Mediterranean | Gonzalez et al. (2008) |
| sea surface water (E) | |||
| Dokdonia donghaensis MED134 | 3.3 Mb (2284) | Korean sea water (E) | Gomez-Consarnau et al. (2007) |
| Leeuwenhoekiella blandensis MED217 | 4.2 Mb (3735) | Mediterranean sea water (E) | Gomez-Consarnau et al. (2007) |
| SPHINGOBACTERIA CLASS | |||
| Chitinophaga pinensis DSM 2588 | 9.1 Mb (7302) | Pine litter in Australia (E) | Del Rio et al. (2010) |
| Pedobacter heparinus DSM 2366 | 5.2 Mb (4287) | Soil (E) | Han et al. (2009) |
| Salinibacter ruber M8 | 3.6 Mb (3086) | Saltern crystallizer pond, Mallorca (E) | Pena et al. (2010) |
| Salinibacter ruber M31 | 3.6 Mb (2934) | Saturated thalassic brines (E) | Mongodin et al. (2005) |
| Rhodothermus marinus R-10 | 3.4 Mb (2914) | Submarine hot spring, Iceland (E) | Nolan et al. (2009) |
| CYTOPHAGIACLASS | |||
| Dyadobacter fermentans NS114 | 7.0 Mb (5804) | Stems from Zea mays (E) | Lang et al. (2009) |
| Cytophaga hutchinsonii ATCC 33406 | 4.4 Mb (3790) | Soil (E) | Xie et al. (2007) |
| Spirosoma linguale 1 | 8.5 Mb (7069) | Soil, freshwater (E) | Lail et al. (2010) |
| BACTEROIDIA CLASS | |||
| Candidatus Azobacteroides | 1.1 Mb (758) | Endosymbiont of | Hongoh et al. (2008) |
| pseudotrichonymphae CfPt1-2 | termite gut protist (S) | ||
| Porphyromonas gingivalis ATCC 33277 | 2.4 Mb (2090) | Deep periodontal pockets (P) | Naito et al. (2008) |
| Porphyromonas gingivalis W83 | 2.3 Mb (1990) | Deep periodontal pockets (P) | Nelson et al. (2003) |
| Parabacteroides distasonis ATCC 8503 | 4.8 Mb (3867) | Human gastrointestinal tract (S) | Xu et al. (2007) |
| Bacteroides vulgatus ATCC 8482 | 5.2 Mb (4088) | Human gastrointestinal tract (S) | Xu et al. (2007) |
| Bacteroides fragilis NCTC 9343 | 5.2 Mb (4274) | Human gastrointestinal tract (S/P) | Cerdeno-Tarraga et al. (2005) |
| Bacteroides fragilis YCH46 | 5.3 Mb (4578) | Human gastrointestinal tract (S/P) | Kuwahara et al. (2004) |
| Bacteroides thetaiotaomicron VPI-5482 | 6.3 Mb (4779) | Human gastrointestinal tract (S) | Xu et al. (2003) |
| Prevotella ruminicola 23 | 3.6 Mb (2763) | Bovine rumen (S) | Purushe et al. (2010) |
| Prevotella bryantii B14 | 3.6 Mb (2780) | Bovine rumen (S) | Purushe et al. (2010) |
| UNCLASSIFIED | |||
| Candidatus Amoebophilus asiaticus 5a2 | 1.9 Mb (1557) | Obligate intracellular | Schmitz-Esser et al. (2010) |
| ameba symbiont (S) |
The functional role is given in brackets: S, symbiont; P, pathogen; E, environmental.