TABLE 1.
IC50 and KD values obtained from four different assays
IC50 values (μm) were derived from competition studies with 100 μm chitohexaose in the DMAB assay, the pNP assay with pNP-GlcNAc2, and the pNP assay with pNP-GlcNAc3. Equilibrium dissociation constants (KD, μm) derived from fluorescence quenching (Fig. 5) are shown. The KD values for wild-type chitinase and the mutant W275G were derived from three-parameter fits of the corresponding ITC experiments assuming one set of sites (Fig. 6, panels A2, B2, C2, and D2, and Scheme 1). The values represent the means ± S.D. from at least three independent sets of the experiments. ND, not determined.
Inhibitor | WT |
W275G |
||||
---|---|---|---|---|---|---|
IC50 |
KD |
KD |
IC50 |
|||
DMAB | pNP | Fluorescence | ITC | ITC | pNP | |
DEQ | 3.9 ± 1.1 | 0.4 ± 0.1 | 0.2 ± 0.02 | 0.07 | 37 | 70 ± 28 |
IDA | 6.4 ± 1.1 | 0.9 ± 0.2 | 0.4 ± 0.02 | ND | ND | 270 ± 33 |
SAN | 7.6 ± 1.3 | 2.3 ± 0.3 | 0.6 ± 0.02 | 2.3 | 28 | 71 ± 26 |
CHE | 11 ± 1.1 | 2.2 ± 0.01 | 0.7 ± 0.03 | ND | ND | 95 ± 34 |
IMI | 21 ± 1.5 | 15 ± 3.2 | 1.0 ± 0.1 | ND | ND | 160 ± 78 |
PEN | 59 ± 1.2 | 3.5 ± 0.5 | 4.0 ± 0.6 | 4.0 | 600 | 260 ± 21 |
PRO | 83 ± 1.0 | 3.7 ± 0.9 | 4.7 ± 0.5 | ND | ND | 360 ± 42 |