Table 2.
Phylogenetic affiliation of bacteria strains isolated from the rhizosphere of A. halleri plants grown in heavy metal polluted site
| Strain | Closest NCBI match | (Accession no.) | % Homologya | Identification experimentb | Phylogenetic groupc (class) |
| A | Pseudomonas putida | (FN600411) | 100% | Fenamiphos and oxamyl degrading bacteria | Gammaproteobacteria |
| Pseudomonas plecoglossicida fA2 | (FJ947052) | 99% | Isolated from sewage of waste water treatment | Gammaproteobacteria | |
| Uncultured bacterium clone ncd999a04c1 | (HM335248) | 99% | Isolated from human clinical samples | unclassified | |
| B | Chryseobacterium joostei LMG18208 | (AY468479) | 98% | Isolated from diseased aquatic animals | Flavobacteria |
| Chryseobacterium sp. M547 | (AB461832) | 97% | Isolated from stems of field-grown soybeans | Flavobacteria | |
| Chryseobacterium joostei LMG 18212 | (NR025387) | 97% | Isolated from dairy environment | Flavobacteria | |
| C | Chryseobacterium sp. BW2 | (DQ985274) | 100% | Isolated from wetland soil | Flavobacteria |
| Chryseobacterium sp. CI06 | (DQ530068) | 99% | Rhizosphere bacteria | Flavobacteria | |
| Bacterium PSB-1-20 | (AY822563) | 99% | Bacteria associated with sand dune plants | Unclassified | |
| D | Chryseobacterium sp. RI39 | (DQ530125) | 98% | Rhizosphere bacteria | Flavobacteria |
| Chryseobacterium sp. HX31 | (EF601823) | 98% | Soil bacteria from alpine grassland | Flavobacteria | |
| Uncultured bacterium clone 50p8_2116 | (FJ935614) | 98% | Maple sap bacteria | Unclassified | |
| E | Tsukamurella strandjordae | (AM284997) | 99% | Arsenic-resistant soil bacteria | Actinobacteria |
| Tsukamurella tyrosinosolvens | (AB478957) | 99% | Isolated from clinical samples | Actinobacteria | |
| Tsukamurella paurometabola | (CP001966) | 99% | Isolated from soil and sludge | Actinobacteria | |
| F | Escherichia coli O55:H7 str. CB9615 | (CP001846) | 99% | Isolated from clinical samples | Gammaproteobacteria |
| Escherichia coli A34 | (GU594295) | 99% | Isolated from clinical samples | Gammaproteobacteria | |
| Uncultured bacterium clone RP_2aaa03b11 | (EU778474) | 99% | Mammals gut bacteria | Unclassified | |
| G | Sphingomonas sp. BIR2-rlima | (EF153191) | 99% | R-limonene-degrading bacteria | Alphaproteobacteria |
| Novosphingobium sp. FND-3 | (DQ831000) | 99% | Carbofuran-degrading bacteria | Alphaproteobacteria | |
| Uncultured bacterium clone SSmCB08-81 | (AB176242) | 99% | Isolated from sub-seafloor hydrothermal field | Alphaproteobacteria | |
| H | Curtobacterium pusillum I3 | (DQ086779) | 99% | Isolated from potato tubers | Actinobacteria |
| Curtobacterium sp. 2340 | (AY688358) | 99% | Isolated from human clinical samples | Actinobacteria | |
| Uncultured bacterium clone ncd523a03c1 | (HM276345) | 98% | Isolated from human clinical samples | Unclassified |
a
Tentative identification and percent similarity values were determined by BLAST and are based on approximately 500 bp of the 16S rDNA gene sequence for each clone (NCBI nucleotide database).
b
Environmental matrices where the isolates are mostly attributed.
c
Classification according to the Bergey's Manual of systematic bacteriology (2nd edn).