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. 2011 Feb 28;62(10):3433–3447. doi: 10.1093/jxb/err015

Table 4.

Shoot proteomic analysis of A. halleri plants subjected to different treatments

No SSP Protein name AC number (gi NCBI) MW (kDa)/pI theoretical Peptide Mascot Fold variationsa
and reference organism count score Mt+8S versus Ctr Mt+8S versus Mt
Photosynthesis, light reactions
1 1204 PSBP1b At1g06680 28078/6.90 11 445 ↑4.45
Arabidopsis thaliana
2 2204b PSBP1b At1g06680 20078/6.90 10 369 ↑2.67
Arabidopsis thaliana
3 5101 PSBP2 At2g30790 27704/9.08 6 204 ↓2.43
Arabidopsis thaliana
4 1302 PSBO2b At3g50820 34998/5.92 9 388 ↑2.43
Arabidopsis thaliana
5 1303 PSBO2b At3g50820 34998/5.92 15 775 ↑2.58
Arabidopsis thaliana
6 1311 PSBO1-like At4g37230 35114/5.68 17 672 n.i.c
Arabidopsis thaliana
7 2407 HCF136 At5g23120 44076/6.79 9 417 ↑3.27
Arabidopsis thaliana
8 2103 δ-subunit ATPase At4g09650 25653/9.04 7 346 ↑2.78
Arabidopsis thaliana
9 4004 β-subunit ATPaseb AtCg00480 52625/5.28 5 194 ↑3.02
Arabidopsis thaliana
10 2601a β-subunit ATPaseb AtCg00480 52905/5.10 14 749 ↑3.0
Arabidopsis thaliana
Photosynthesis, dark reactions
11 1106 Rubisco: large subunit AtCg00490 52922/5.88 5 148 ↑6.03
Arabidopsis thaliana
12 4611 Rubisco: large subunit ArhiCp028 52933/5.96 15 614 ↑2.93
Arabis hirsuta
13 5704 Rubisco: large subunit ArhiCp028 52933/5.96 19 761 ↑2.44
Arabis hirsuta
14 3008 Rubisco: small subunit At5g38430 20273/7.59 4 160 ↑7.20
Arabidopsis thaliana
15 4001 Rubisco: small subunit gi|406727 20178/8.24 4 95 ↑3.48
Brassica napus
16 8001 Rubisco: small subunit At1g67090 20448/7.59 6 253 ↑2.41
Arabidopsis thaliana
17 6007 Rubisco: small subunit At5g38430 20273/7.59 5 223 ↑2.04
Arabidopsis thaliana
18 1505 Phosphoribulokinase At1g32060 44436/5.71 13 475 ↑2.16 ↑2.13
Arabidopsis thaliana
19 2503 Rubisco activase At2g39730 52006/5.69 10 446 ↑2.4
Arabidopsis thaliana
Stress
20 7507 AtMDAR1b At3g52880 46458/6.41 9 439 ↓2.5
Arabidopsis thaliana
21 3504 AtMDAR2b At5g03630 47450/5.24 16 496 ↓2
Arabidopsis thaliana
22 4203 Fe-Superoxide At4g25100 25409/6.30 3 165 ↑2.16
dismutase, FSD1 Arabidopsis thaliana
23 4101 Allene oxide At3g25770 21199/5.65 6 247 ↓4.54 ↓4.05
cyclase Arabidopsis thaliana
24 7307 Endochitinase gi|7798632 32004/5.93 5 156 ↓5
(Class I) Arabis holboellii
25 8005 Endochitinase gi|7798632 32004/5.93 3 133 ↓3.85
(Class I) Arabis holboellii
26 5003 Malate dehydrogenase At1g04410 35548/6.11 3 97 ↑5.13
Arabidopsis thaliana
27 6101 Germin-like protein At5g20630 21849/6.81 2 72 ↑2.44 ↑2
AtGER3 Arabidopsis thaliana
28 5102 Lipocalin, TIL1 At5g58070 21421/5.97 2 84 ↑2.65
Arabidopsis thaliana
29 2601b Enolase At2g36530 47689/5.54 9 433 ↑3.0
LOS2 Arabidopsis thaliana
Cellular metabolism and organization
30 2204a Plastidic chaperonin, At5g20720 26785/8.86 11 572 ↑2.67
AtCPN20b Arabidopsis thaliana
31 5209 Vegetative storage At5g24770 29806/6.17 6 239 ↓4.16
protein, VSP2 Arabidopsis thaliana
32 5710 α-subunit ATPase AtMg01190 55011/6.23 20 1046 ↓2.27
mitochondrion Arabidopsis thaliana
33 6712 β-glucosidase 1 At1g52400 60462/6.89 11 383 ↓6.25 ↓2.48
Arabidopsis thaliana
34 6713 β-glucosidase 1 At1g52400 60462/6.89 13 434 ↓<10
Arabidopsis thaliana
35 7702 β-glucosidase 1 At1g52400 60462/6.89 7 228 ↓3.45
Arabidopsis thaliana

Untreated control plants (Ctr); plants treated with 1 mM CdSO4 and 10 mM ZnSO4 (Mt); plants treated with 1 mM CdSO4 and 10 mM ZnSO4 and the addition of the eight selected bacterial strains (Mt+8S).

a

Fold variations in spot abundance between the different treatments and the corresponding control. No value in the table indicate that, for the corresponding spot, was not possible to identify a change that exceeds both a fold of variation >2 and a P <0.05.

b

Proteins whose expression pattern have been confirmed by Western analysis.

c

Newly induced.