Table 1.
Immunopurified Y-nitrated proteins identified in Arabidopsis thaliana seedlings by a shotgun LC-MS/MS approach Those proteins that have been previously reported as nitrated in other plant systems are been marked with a single (Chaki et al., 2009) or double asterisk (Cecconi et al., 2009).
| SwissProt locus | AGI code | Description | MASCOT score | Peptides matched (no.) | Best two peptides (ion score) |
| ATPB_ARATH | AtCg00480 | ATP synthase subunit beta | 1150 | 23 | R.FVQAGSEVSALLGR.M (85) |
| K.IGLFGGAGVGK.T (80) | |||||
| METE_ARATH | At5g17920 | Methionine synthase 1 | 1014 | 27 | K.DEALFSANAAALASR.R (97) |
| K.MLAVLEQNILWVNPDCGLK.T(91) | |||||
| G3PB_ARATH | At1g42970 | GAPDH B, chloroplast | 884 | 22 | K.IVDNETISVDGK.L (85) |
| R.KDSPLEVVVLNDSGGVK.N (75) | |||||
| G3PA_ARATH | At3g26650 | GAPDH A, chloroplast | 831 | 18 | R.VPTPNVSVVDLVVQVSK.K (68) |
| K.KVIITAPGK.G (60) | |||||
| RCA_ARATH | At2g39730 | Rubisco activase, chloroplast** | 761 | 20 | R.GLAYDTSDDQQDITR.G (81) |
| R.VQLAETYLSQAALGDANADAIGR.G (72) | |||||
| GOX1_ARATH | At3g14415 | Probable peroxisomal glycolate oxidase1 | 670 | 16 | R.AASAAGTIMTLSSWATSSVEEVASTGPGIR.F (101) |
| K.DIQWLQTITNMPILVK.G (58) | |||||
| GOX2_ARATH | At3g14420 | Probable peroxisomal glycolate oxidase2 | 651 | 16 | R.AASAAGTIMTLSSWATSSVEEVASTGPGIR.F (101) |
| R.IPVFLDGGVR.R (52) | |||||
| SAHH1_ARATH | At4g13940 | Adenosyl homocysteinase 1* | 581 | 18 | K.VALLHLGK.L (55) |
| R.DSAAVFAWK.G (54) | |||||
| PGKH_ARATH | At1g56190 | Phosphoglycerate kinase, chloroplast | 542 | 14 | K.LASLADLYVNDAFGTAHR.A (77) |
| K.FAAGTEAIANK.L (75) | |||||
| ATPA_ARATH | AtCg00120 | ATP synthase subunit alpha** | 504 | 12 | R.EAYPGDVFYLHSR.L (64) |
| R.EQHTLIIYDDLSK.Q (62) | |||||
| EFTU_ARATH | At4g20360 | Elongation factor Tu, chloroplast | 491 | 13 | K.KYDEIDAAPEER.A (72) |
| R.SYTVTGVEMFQK.I (54) | |||||
| G3PC_ARATH | At3g04120 | GAPDH C, cytosolic | 479 | 13 | R.VPTVDVSVVDLTVR.L (71) |
| K.KVVISAPSK.D (52) | |||||
| CAHC_ARATH | At3g01500 | Carbonic anhydrase 1, chloroplast | 475 | 13 | K.YGGVGAAIEYAVLHLK.V (64) |
| R.EAVNVSLANLLTYPFVR.E (60) | |||||
| EF1A_ARATH | At1g07940 | Elongation factor 1-alpha | 450 | 11 | R.EHALLAFTLGVK.Q (103) |
| K.FHINIVVIGHVDSGK.S (82) | |||||
| ACT7_ARATH | At5g09810 | Actin-7 | 448 | 12 | K.SEYDESGPSIVHR.K (75) |
| K.NYELPDGQVITIGAER.F (57) | |||||
| ACT2_ARATH | At3g18780 | Actin-2 | 430 | 12 | K.NYELPDGQVITIGAER.F (57) |
| K.AGFAGDDAPR.A (52) | |||||
| KPPR_ARATH | At1g32060 | Phosphoribulokinase, chloroplast | 418 | 13 | R.LDELIYVESHLSNLSTK.F (55) |
| K.ILVIEGLHPMFDER.V (52) | |||||
| RUBB_ARATH | At1g55490 | Rubisco large subunit beta | 389 | 13 | R.GYISPYFVTDSEK.M (71) |
| K.YEDLMAAGIIDPTK.V (52) | |||||
| CAH2_ARATH | At5g14740 | Carbonic anhydrase 2 | 379 | 11 | R.EAVNVSLANLLTYPFVR.E (60) |
| K.VENIVVIGHSACGGIK.G (59) | |||||
| TBA6_ARATH | At4g14960 | Tubulin alpha-6 chain | 358 | 11 | R.AVFVDLEPTVIDEVR.T (67) |
| R.LVSQVISSLTASLR.F (50) | |||||
| METK1_ARATH | At1g02500 | S-Adenosyl methionine synthetase 1 | 334 | 11 | R.FVIGGPHGDAGLTGR.K (73) |
| K.IIIDTYGGWGAHGGGAFSGK.D (64) | |||||
| RUBA_ARATH | At2g28000 | Rubisco large subunit alpha, chloroplast | 331 | 11 | K.VVNDGVTIAR.A (60) |
| K.TNDSAGDGTTTASILAR.E (56) | |||||
| METK2_ARATH | At4g01850 | S-Adenosyl methionine synthetase 2 | 326 | 11 | R.FVIGGPHGDAGLTGR.K (73) |
| K.IIIDTYGGWGAHGGGAFSGK.D (64) | |||||
| GLNA2_ARATH | At5g35630 | Glutamine synthetase, chloroplast/mitochondrial** | 314 | 10 | K.VSGEVPWFGIEQEYTLLQQNVK.W (76) |
| K.HETASIDQFSWGVANR.G (42) | |||||
| SGAT_ARATH | At2g13360 | Serine-glyoxylate aminotransferase | 306 | 10 | R.AALDLIFEEGLENIIAR.H (61) |
| K.VFFDWNDYLK.F (42) | |||||
| RBS1A_ARATH | At1g67090 | Rubisco small subunit 1A, chloroplast | 299 | 9 | K.LPLFGCTDSAQVLK.E (71) |
| K.EVDYLIR.N (46) | |||||
| TBA3_ARATH | At5g19770 | Tubulin alpha-3/alpha-5 chain | 284 | 8 | R.AVFVDLEPTVIDEVR.T (67) |
| R.LISQIISSLTTSLR.F (65) | |||||
| PORB_ARATH | At4g27440 | Protochlorophyllide reductase B | 263 | 12 | R.LLLDDLKK.S (53) |
| K.GYVSETESGKR.L (46) | |||||
| RBS1B_ARATH | At5g38430 | Rubisco small subunit 1B, chloroplast | 254 | 7 | K.LPLFGCTDSAQVLK.E (71) |
| K.EVDYLLR.N (46) | |||||
| ILV5_ARATH | At3g58610 | Ketol-acid reductoisomerase, chloroplast | 240 | 9 | K.VSLAGYEEYIVR.G (44) |
| K.APVSLDFETSVFK.K (43) | |||||
| TBB4_ARATH | At5g44340 | Tubulin beta-4 chain | 226 | 8 | K.LAVNLIPFPR.L (54) |
| R.YLTASAVFR.G (35) | |||||
| HSP71_ARATH | At5g02500 | Heat shock cognate 70 kDa protein 1* | 217 | 10 | R.MVNHFVQEFK.R (40) |
| K.ATAGDTHLGGEDFDNR.M (35) | |||||
| F16P1_ARATH | At3g54050 | Fructose-1,6-bisphosphatase | 214 | 10 | R.TLLYGGIYGYPR.D (58) |
| R.VLDIQPTEIHQR.V (42) | |||||
| TBB2_ARATH | At5g62690 | Tubulin beta-2/beta-3 chain | 203 | 9 | K.LAVNLIPFPR.L (54) |
| R.AVLMDLEPGTMDSLR.S (35) | |||||
| TBB1_ARATH | At1g75780 | Tubulin beta-1 chain | 193 | 8 | K.LAVNLIPFPR.L (54) |
| R.AVLMDLEPGTMDSIR.S (35) | |||||
| PGMP_ARATH | At5g51820 | Phosphoglucomutase, chloroplast | 173 | 9 | K.SLPTKPIEGQK.T (30) |
| K.LPFFEVPTGWK.F (26) | |||||
| P2SAF_ARATH | At5g23120 | Photosystem II stability/assembly factor HCF136 | 172 | 8 | R.ADGGLWLLVR.G (40) |
| K.GTGITEEFEEVPVQSR.G (34) | |||||
| HSP73_ARATH | At3g09440 | Heat shock cognate 70 kDa protein 3* | 172 | 7 | R.MVNHFVQEFK.R (40) |
| K.ATAGDTHLGGEDFDNR.M (35) | |||||
| APX1_ARATH | At1g07890 | L-Ascorbate peroxidase 1, cytosolic | 161 | 5 | K.EGLLQLVSDK.A (44) |
| K.QMGLSDKDIVALSGAHTLGR.C (35) | |||||
| MTDH_ARATH | At4g39330 | Probable mannitol dehydrogenase | 139 | 5 | K.NYGGYSENIVVDQR.F (47) |
| K.NYGGYSENIVVDQR.F (34) | |||||
| CD48A_ARATH | At3g09840 | Cell division control protein 48 A | 120 | 6 | R.KGDLFLVR.G (29) |
| R.IVSQLLTLMDGLK.S (29) | |||||
| GME_ARATH | At5g28840 | GDP-mannose 3,5-epimerase | 112 | 5 | R.SFTFIDECVEGVLR.L (43) |
| K.KLPIHHIPGPEGVR.G (31) | |||||
| GBLP_ARATH | At1g18080 | Guanine nucleotide-binding protein subunit beta | 103 | 4 | R.LWDLAAGVSTR.R (42) |
| K.DGVVLLWDLAEGK.K (27) | |||||
| CLPP_ARATH | AtCg00670 | ATP-dependent Clp protease | 99 | 2 | R.SPGEGDTSWVDIYNR.L (70) |
| R.TGKPIWVISEDMER.D (30) | |||||
| GCST_ARATH | At1g11860 | Aminomethyltransferase, mitochondrial | 99 | 5 | K.GGDVSWHIHDER.S (25) |
| R.AEGGFLGADVILQQLK.D (24) | |||||
| AAT5_ARATH | At4g31990 | Aspartate aminotransferase, chloroplast | 98 | 5 | K.ATAELLFGAGHPVIK.E (27) |
| R.VATIQGLSGTGSLR.L (24) | |||||
| ACA9_ARATH | At3g21180 | Ca-transporting ATPase 9, plasma membrane | 98 | 7 | R.VAIDSMAK.N (28) |
| R.QAALVLNASRR.F (21) | |||||
| RH56_ARATH | At5g11200 | DEAD-box ATP-dependent RNA helicase 56 | 97 | 5 | K.LSEMEKNR.K (30) |
| K.VSVFYGGVNIK.I (25) | |||||
| ENO_ARATH | At2g36530 | Enolase | 96 | 6 | K.AGAVVSGIPLYK.H (30) |
| K.LAMQEFMILPVGAASFK.E (30) | |||||
| MRP7_ARATH | At3g13100 | Multidrug resistance-associated protein 7 | 86 | 7 | R.YGPHLPMVLRGLTCTFR.G (20) |
| R.GIEAGWLK.K (17) | |||||
| AFB3_ARATH | At1g12820 | AUXIN SIGNALLING F-BOX 3 | 84 | 6 | R.LWILDSIGDK.G (23) |
| R.LMSCAPQLVDLGVGSYENEPDPESFAK.L (17) | |||||
| PDX13_ARATH | At5g01410 | Pyridoxal biosynthesis protein | 79 | 4 | K.VGLAQMLR.G (43) |
| R.NMDDDEVFTFAK.K (14) | |||||
| PDX11_ARATH | At2g38230 | Pyridoxal biosynthesis protein | 75 | 3 | K.VGLAQMLR.G (43) |
| K.IAAPYDLVVQTK.E (20) | |||||
| EFTM_ARATH | At4g02930 | Elongation factor Tu, mitochondrial | 75 | 2 | R.GSALSALQGTNDEIGR.Q (49) |
| K.LMDAVDEYIPDPVR.V (26) | |||||
| MDR11_ARATH | At3g28860 | Multidrug resistance protein 11 (P-glycoprotein 19) | 73 | 6 | K.SSVIAMIER.F (24) |
| R.AVLKNPTVLLLDEATSALDAESECVLQEALERLMR.G (22) | |||||
| MDHP_ARATH | At3g47520 | Malate dehydrogenase, chloroplast | 70 | 3 | K.DVNVVVIPAGVPR.K (35) |
| K.LFGVTTLDVVR.A (22) | |||||
| SR54C_ARATH | At5g03940 | Signal recognition particle 54 kDa protein, chloroplast | 70 | 5 | R.GVKPDQQLVK.I (16) |
| R.QEDAEDLQKK.I (16) | |||||
| MDHG1_ARATH | At5g09660 | Malate dehydrogenase, glyoxysomal | 70 | 3 | R.TGAEEVYQLGPLNEYER.I (31) |
| K.LLGVTTLDVAR.A (30) | |||||
| TAF1B_ARATH | At3g19040 | Transcription initiation factor TFIID subunit 1-B | 69 | 7 | R.ENLKQLNSDARGR.L (20) |
| K.EIGTPICQMKKILK.E (17) | |||||
| TYW23_ARATH | At4g04670 | tRNA wybutosine-synthesizing protein | 69 | 5 | R.ADPLNILNDVWR.L (24) |
| K.RVIIAIRCSIR.M (15) | |||||
| CATA3_ARATH | At1g20620 | Catalase-3 | 69 | 3 | R.LGPNYLQLPVNAPK.C (32) |
| K.GFFEVTHDISNLTCADFLR.A (28) | |||||
| KASC1_ARATH | At5g46290 | 3-Oxoacyl-[acyl-carrier-protein] synthase I, chloroplast | 68 | 3 | K.LLSGESGISLIDR.F (53) |
| R.ADGLGVSSCIER.C (9) | |||||
| ATPG1_ARATH | At4g04640 | ATP synthase gamma chain 1, chloroplast | 68 | 2 | R.ALQESLASELAAR.M (52) |
| R.ASSVSPLQASLRELR.D (16) | |||||
| GRP7_ARATH | At2g21660 | Glycine-rich RNA-binding protein 7 | 66 | 1 | R.ALETAFAQYGDVIDSK.I (66) |
| FDH_ARATH | At5g14780 | Formate dehydrogenase, mitochondrial | 66 | 5 | R.QAVVDAVESGHIGGYSGDVWDPQPAPK.D (18) |
| R.LQMAPELEK.E (17) | |||||
| HSP83_ARATH | At5g56010 | Heat shock protein 81-3* | 62 | 5 | K.GIEVLYMVDAIDEYAIGQLK.E (21) |
| K.EGQNDIFYITGESK.K (16) | |||||
| TGA2_ARATH | At5g06950 | Transcription factor TGA2 | 61 | 4 | K.LTQLEQELQR.A (19) |
| R.LQTLQQMIR.V (15) | |||||
| TCPA_ARATH | At3g20050 | T-complex protein 1 subunit alpha | 61 | 6 | R.NKIHPTSIISGYR.L (19) |
| R.GANDYMLDEMER.A (15) | |||||
| CAPP3_ARATH | At3g14940 | Phosphoenolpyruvate carboxylase 3 | 60 | 4 | K.LLVSEDLWAFGEKLR.A (22) |
| K.RLVSDLGK.S (15) | |||||
| WRK19_ARATH | At4g12020 | WRKY transcription factor 19 | 60 | 6 | K.CTYLGCPSKRK.V (19) |
| K.LCQVEGCQKGAR.D (16) | |||||
| THI4_ARATH | At5g54770 | Thiazole biosynthetic enzyme, chloroplast | 59 | 2 | K.HAALFTSTIMSK.L (33) |
| K.ALDMNTAEDAIVR.L (26) | |||||
| OMT1_ARATH | At5g54160 | Quercetin 3-O-methyltransferase 1 | 59 | 2 | K.NPEAPVMLDR.I (34) |
| K.VLMESWYHLK.D (25) | |||||
| IF5A2_ARATH | At1g26630 | Eukaryotic translation initiation factor 5A-2 (eIF-5A) | 59 | 2 | K.LPTDDGLTAQMR.L (33) |
| K.CHFVAIDIFTAK.K (26) | |||||
| PKL_ARATH | At2g25170 | PICKLE chromatin-remodelling factor | 58 | 6 | K.GLLHPYQLEGLNFLR.F (19) |
| K.AYKSNHRLK.T (14) | |||||
| Y1934_ARATH | At1g09340 | Uncharacterized protein chloroplast | 57 | 3 | K.SSLSAEGFDVVYDINGR.E (26) |
| R.FIGLFLSR.I (16) | |||||
| VIN3_ARATH | At5g57380 | VERNALIZATION-INSENSITIVE 3 | 56 | 5 | R.GIVNRLSSGVHVQKLCSQAMEALDK.V (27) |
| R.NEIMKIICAEMGKER.K (14) | |||||
| PME4_ARATH | At2g47030 | Pectinesterase-4 (VANGUARD1-like protein 1) | 54 | 6 | K.AVQGICQSTSDKASCVK.T (16) |
| K.NTAGPMGHQAAAIRVNGDRAVIFNCR.F (12) | |||||
| APT1_ARATH | At1g27450 | Adenine phosphoribosyltransferase 1 (APRT 1) | 54 | 3 | R.AIIIDDLIATGGTLAAAIR.L (35) |
| K.DTIALFVDR.Y (15) | |||||
| DRL19_ARATH | At1g63350 | Putative disease resistance protein At1g63350 | 54 | 4 | R.NAELQRLCLCGFCSKSLTTSYR.Y (17) |
| K.MCLLYCALFPEDAK.I (16) | |||||
| FABG_ARATH | At1g24360 | 3-Oxoacyl-[acyl-carrier-protein] reductase, chloroplast | 54 | 3 | K.WGTIDVVVNNAGITR.D (25) |
| K.ILGTIPLGR.Y (19) | |||||
| BSL1_ARATH | At4g03080 | Serine/threonine-protein phosphatase BSL1 | 53 | 4 | K.IICMHGGIGR.S (16) |
| R.HGAASVGIRIYVHGGLR.G (16) | |||||
| PER9_ARATH | At1g44970 | Peroxidase 9 | 52 | 3 | K.AYAEDERLFFQQFAK.S (26) |
| K.EPRMAASLLR.L (13) | |||||
| UPL1_ARATH | At1g55860 | E3 ubiquitin-protein ligase UPL1 | 52 | 5 | K.LLSDIVLMYSHGTSVILR.R (20) |
| R.LIDFDNKKAYFR.S (16) | |||||
| HDA5_ARATH | At5g61060 | Histone deacetylase 5 | 51 | 3 | R.KVGLIYDETMCK.H (24) |
| K.LQLAGVSQR.C (18) | |||||
| HAC12_ARATH | At1g16710 | HAC12 histone acetyltransferase | 51 | 5 | K.LTTHPSLADQNAQNK.E (14) |
| K.ASGQSDFSGNASK.D (13) | |||||
| MRP14_ARATH | At3g59140 | Multidrug resistance-associated protein 14 | 50 | 7 | R.IATFLEAPELQGGERRR.K (16) |
| R.VVAVENPTKPVK.E (11) | |||||
| ASHH2_ARATH | At1g77300 | Histone-lysine N-methyltransferase ASHH2 | 50 | 6 | K.ILPRPRPR.M (13) |
| K.SPSENGSHLIPNAKKAK.H (13) | |||||
| ATM_ARATH | At3g48190 | Serine/threonine-protein kinase ATM (PI3Kc_related) | 47 | 8 | R.RVLLQILGCEKCTMQHLLQSASLLR.K (14) |
| K.QIPMAQLHENEGRK.S (11) | |||||
| FBX10_ARATH | At1g51290 | Putative F-box only protein 10 | 47 | 4 | R.LVICCYDETQQVYIYIVRR.N (16) |
| K.YVIGYDNKK.R (14) | |||||
| PSBP1_ARATH | At1g06680 | Oxygen-evolving enhancer protein 2-1, chloroplast | 45 | 3 | K.TNTDFLPYNGDGFK.V (25) |
| K.EIEYPGQVLR.F (12) | |||||
| CHLD_ARATH | At4g18480 | Magnesium-chelatase subunit chlD, chloroplast | 45 | 3 | K.IYKAGMSLLVIDTENK.F (26) |
| R.VAAVGIATQFQERCNEVFR.M (22) | |||||
| FBK38_ARATH | At2g29800 | Putative F-box/Kelch-repeat | 44 | 3 | K.MANFGGKLVILGCYR.S (20) |
| R.HLRNMKR.D (16) | |||||
| GLYM_ARATH | At4g37930 | Serine hydroxymethyltransferase mitochondrial | 44 | 4 | R.GFVEEDFAK.V (22) |
| K.VLEAVHIASNK.N (11) | |||||
| SCP37_ARATH | At3g52010 | Serine carboxypeptidase-like 37 | 44 | 3 | K.AIHANTTK.L (19) |
| K.KLPGQPSGVSFR.Q (18) | |||||
| COL14_ARATH | At2g33500 | CONSTANS-LIKE 14 | 44 | 3 | K.LCLPCDQHVHSANLLSR.K (20) |
| K.SNNIPAAIHSHK.S (14) | |||||
| SYV_ARATH | At1g14610 | Valyl-tRNA synthetase | 43 | 7 | K.SDLFKADAK.S (16) |
| K.INLDILRVVGYR.Q (13) | |||||
| DRP1D_ARATH | At2g44590 | Dynamin-related protein 1D | 43 | 3 | R.MQCAKRLELYK.K (22) |
| R.MGSEYLAK.L (14) | |||||
| VATB_ARATH | At1g76030 | Vacuolar ATP synthase subunit B | 43 | 3 | R.NIFQSLDLAWTLLR.I (16) |
| R.KFVMQGAYDTR.N (15) | |||||
| SIZ1_ARATH | At5g60410 | E3 SUMO-protein ligase SIZ1 | 42 | 5 | K.WQCPICLK.N (15) |
| R.HRSLNKICIILCAGK.N (12) | |||||
| HAC2_ARATH | At1g67220 | HAC2 histone acetyltransferase | 42 | 4 | R.ACTGCYTKNRTLR.H (16) |
| K.LGTVVDIIEPMKCDER.S (11) | |||||
| TMK1_ARATH | At1g66150 | Putative receptor protein kinase TMK1 precursor | 42 | 4 | K.GNDPCTNWIGIACSNGNITVISLEK.M (18) |
| K.VVNLTNNHLQGPVPVFK.S (12) | |||||
| SYM_ARATH | At4g13780 | Probable methionyl-tRNA synthetase | 42 | 3 | R.LVEGSCPFEGCNYDSAR.G (26) |
| K.CKVCQNTPR.I (12) | |||||
| WEE1_ARATH | At1g02970 | Wee1-like protein kinase | 41 | 3 | R.AMPPPCLK.N (19) |
| K.LPLLPGHSLQLQQLLK.T (15) | |||||
| ARR12_ARATH | At2g25180 | Two-component response regulator | 41 | 5 | –.MTVEQNLEALDQFPVGMR.V (17) |
| R.HCQYHVTTTNQAQK.A (9) | |||||
| CESA4_ARATH | At5g44030 | Cellulose synthase A catalytic subunit 4 | 41 | 4 | K.KAGAMNAMVR.V (22) |
| K.SSLMSQKNFEKR.F (12) | |||||
| AUR2_ARATH | At2g25880 | Serine/threonine-protein kinase Aurora-2 | 41 | 3 | R.LYGYFYDQKRVYLILEYAVR.G (18) |
| M.LYQAASEAAQK.R (14) | |||||
| Y1838_ARATH | At1g18380 | Uncharacterized protein At1g18380 | 41 | 3 | R.YIMEDKACR.R (32) |
| R.SSDSDEGCMKYAEIPMLR.S (8) | |||||
| 2AAA_ARATH | At1g25490 | Serine/threonine-protein phosphatase 2A regulatory subunit A alpha | 41 | 4 | R.LAGGEWFAAR.V (17) |
| R.RAAASNLGK.F (11) | |||||
| FBK84_ARATH | At4g19865 | F-box/Kelch-repeat protein At4g19865 | 40 | 3 | K.IEFGNVNEMCAYDTKLCK.W (20) |
| K.IYVMGGCQGLKDEPWAEVFNTK.T (10) | |||||
| MSH3_ARATH | At4g25540 | DNA mismatch repair protein MSH3 | 40 | 4 | R.LVNAGYKIGVVK.Q (17) |
| R.LVNAGYK.I (13) | |||||
| DCDA1_ARATH | At3g14390 | Diaminopimelate decarboxylase 1, chloroplast | 39 | 1 | R.DAAVLMIEYIDEIR.R (39) |
| GL25_ARATH | At5g26700 | Probable germin-like protein subfamily 2–5 | 39 | 3 | R.IDYAPNGLNPPHVHPR.A (17) |
| K.LPGLNTLGLSMSR.I (14) | |||||
| CYSK1_ARATH | At4g14880 | Cysteine synthase (OAS-TL A) | 39 | 3 | K.IDGFVSGIGTGGTITGAGK.Y (21) |
| R.IGFSMISDAEK.K (15) | |||||
| MRP13_ARATH | At1g30410 | Multidrug resistance-associated protein 13 | 39 | 4 | R.KKYYNCVLGLLACYCVVEPVLR.L (22) |
| R.SVLIKQEER.E (14) | |||||
| ERG11_ARATH | At5g24150 | Squalene monooxygenase 1,1 | 39 | 3 | R.RLLQPLSNLGNAQK.I (18) |
| R.LFGLAMKMLVPHLK.A (13) | |||||
| DPOLA_ARATH | At5g67100 | DNA polymerase alpha catalytic subunit | 38 | 4 | K.NGCNVLSIENSERALLNRLFLELNK.L (14) |
| R.KRSGILSHFTVVR.N (13) | |||||
| CWP17_ARATH | At2g06850 | 23 kDa cell wall protein | 38 | 3 | –.IPCRKAIDVPFGTR.Y (19) |
| R.KAIDVPFGPR.Y (13) | |||||
| MOCOS_ARATH | At1g16540 | Molybdenum cofactor sulphurase (ABA3) | 38 | 7 | K.LLKSLTPSAIWMHTTSLSIYVK.K (12) |
| R.YEIDEKR.Q (10) | |||||
| ALA11_ARATH | At1g13210 | Phospholipid-transporting ATPase 11 | 38 | 5 | K.SLTYALEDDFKK.K (18) |
| R.SMAMRSNGSSLVGDDLDVVVDQSGPK.I (10) | |||||
| TAP1_ARATH | At1g70610 | Antigen peptide transporter-like 1, chloroplast | 38 | 3 | R.GCFFGIANMILVKRMR.E (16) |
| R.QRIGYVGQEPK.L (12) | |||||
| AGO1_ARATH | At1g48410 | Protein argonaute | 37 | 2 | R.INLLDEEVGAGGQR.R (36) |
| R.GYGQPPQQQQQYGGPQEYQGRGR.G (4) | |||||
| FBK19_ARATH | At1g32430 | Putative F-box/Kelch-repeat protein At1g32430 | 37 | 2 | K.VEVRELTLNNPGLK.A (22) |
| R.CIKLEVNEPSLDFLGIGYDNNK.R (14) | |||||
| LUMI_ARATH | At4g02560 | LUMINIDEPENDENS | 37 | 2 | K.KHMLGSNPSYNK.E (21) |
| K.HDSSTHPYWNQNK.R (18) | |||||
| CAPP1_ARATH | At1g53310 | Phosphoenolpyruvate carboxylase 1 | 36 | 2 | K.LEELGSVLTSLDPGDSIVIAK.A (23) |
| K.GIAAGLQNTG.– (14) | |||||
| WBC16_ARATH | At3g55090 | Probable white–brown complex homologue protein 16 | 36 | 2 | K.TIIGDEGHR.G (29) |
| R.ILFYLCLLLGSKNK.R (8) | |||||
| CNGC4_ARATH | At5g54250 | Cyclic nucleotide-gated ion channel 4 | 36 | 3 | R.IGLTCGGR.R (36) |
| R.GVDECEMVQNLPEGLR.R (5) | |||||
| U496I_ARATH | At2g18630 | UPF0496 protein At2g18630 | 36 | 2 | K.INSEYTEHLSSYER.A (21) |
| K.YEKVVRGQK.E (13) | |||||
| ARFM_ARATH | At1g34170 | Auxin response factor 13 | 36 | 2 | K.FVDAMNNNYIVGSR.F (20) |
| K.FVDAMNNNYIVGSRFR.M (16) | |||||
| CYSKM_ARATH | At3g59760 | Cysteine synthase, mitochondrial (OAS-TL C) | 35 | 3 | K.IQGIGAGFIPK.N (15) |
| R.IGYSMVTDAEQKGFISPGK.S (15) |