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. 2011 Apr 20;39(12):e83. doi: 10.1093/nar/gkr239

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Results of CV-B1H on Zif268 analyzed with GRaMS. (A) Plot of predicted energies versus growth rates per 6-mer. The GRaMS PWM (8 h, 50 μM IPTG, 2 mM 3-AT) was used to predict the energies. The growth rates (shifted so that the median value is zero) are from the 8 h, 50 μM IPTG, 2 mM 3-AT data set used to estimate the GRaMS PWM. (B) Sequence logo for the GRaMS PWM obtained from the same data set. The y-axis indicates the information content of each position in bits. Sequence logos were produced using in-house software, svgSeqLogo, written by RGC.