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. Author manuscript; available in PMC: 2012 Jun 10.
Published in final edited form as: Vaccine. 2011 Apr 21;29(26):4308–4315. doi: 10.1016/j.vaccine.2011.04.028

Table 1.

Polymorphism in Pvs230 and tests for neutrality

Area Region No. of polymorphic sites No. of singletons No. of haplotypes Haplotype diversity Hd ± SD Nucleotide diversity θπ ± SD dN ± SE dS ± SE P value
Brazil (N=20) Entire gene 15 4 6 0.747 ± 0.076 0.00060 ± 0.00007 0.00059 ± 0.00024 0.00065 ± 0.00030 0.8752
IVP 1 0 2 0.395 ± 0.101 0.00070 ± 0.00018 0.00092 ± 0.00092 0.00000 ± 0.00000 0.3105
ICP 14 4 6 0.747 ± 0.076 0.00059 ± 0.00006 0.00056 ± 0.00027 0.00070 ± 0.00030 0.7405
Turkey (N=20) Entire gene 13 2 6 0.763 ± 0.066 0.00054 ± 0.00009 0.00030 ± 0.00011 0.00140 ± 0.00054 0.0496
IVP 0 0 1 0.000 ± 0.000 0.00000 ± 0.00000 0.00000 ± 0.00000 0.00000 ± 0.00000 1.0000
ICP 13 2 6 0.763 ± 0.066 0.00059 ± 0.00010 0.00032 ± 0.00012 0.00152 ± 0.00062 0.0617
Madagascar (N=7) Entire gene 14 9 7 1.000 ± 0.076 0.00063 ± 0.00012 0.00040 ± 0.00016 0.00144 ± 0.00063 0.1171
IVP 1 0 2 0.571 ± 0.119 0.00101 ± 0.00021 0.00133 ± 0.00133 0.00000 ± 0.00000 0.3105
ICP 13 9 7 1.000 ± 0.076 0.00060 ± 0.00012 0.00033 ± 0.00014 0.00156 ± 0.00067 0.0719
China(N=20) Entire gene 13 4 14 0.958 ± 0.028 0.00051 ± 0.00005 0.00050 ± 0.00018 0.00056 ± 0.00035 0.8789
IVP 4 3 4 0.574 ± 0.090 0.00143 ± 0.00038 0.00164 ± 0.00121 0.00075 ± 0.00073 0.5396
ICP 9 1 14 0.958 ± 0.028 0.00044 ± 0.00003 0.00041 ± 0.00018 0.00054 ± 0.00037 0.7456
Thailand (N=20) Entire gene 32 14 18 0.989 ± 0.019 0.00084 ± 0.00010 0.00065 ± 0.00016 0.00153 ± 0.00047 0.0723
IVP 5 1 6 0.726 ± 0.090 0.00230 ± 0.00045 0.00303 ± 0.00172 0.00000 ± 0.00000 0.0728
ICP 27 13 18 0.989 ± 0.019 0.00073 ± 0.00009 0.00047 ± 0.00015 0.00165 ± 0.00047 0.0241
PNG (N=21) Entire gene 28 17 16 0.976 ± 0.020 0.00062 ± 0.00010 0.00030 ± 0.00011 0.00175 ± 0.00056 0.0130
IVP 1 1 2 0.095 ± 0.084 0.00017 ± 0.00015 0.00022 ± 0.00021 0.00000 ± 0.00000 0.2976
ICP 27 16 16 0.976 ± 0.020 0.00065 ± 0.00011 0.00030 ± 0.00012 0.00189 ± 0.00060 0.0123
Worldwide (N=113) Entire gene 77 32 72 0.983 ± 0.005 0.00118 ± 0.00003 0.00089 ± 0.00022 0.00221 ± 0.00064 0.0494
IVP 8 4 9 0.731 ± 0.017 0.00203 ± 0.00013 0.00263 ± 0.00154 0.00013 ± 0.00013 0.1128
ICP 69 28 71 0.983 ± 0.005 0.00111 ± 0.00003 0.00076 ± 0.00020 0.00238 ± 0.00067 0.0218

Sequence lengths are 564 bp and 7437 by for interspecies variable part and interspecies conserved part, respectively. IVP, interspecies variable part; ICP, interspecies conserved part.

HHS Vulnerability Disclosure