Table 5.
List of Known MMU16 Genes Present in Three Copies in Ts65Dn Mice and Their Expression Level as Detected by the Number of Corresponding Tags in Normal and Ts65Dn SAGE
| Gene name | GenBank No. | pA site | TAG sequence | Ts65Dn | Normal | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| App | X59379 | yes | A | T | A | G | C | T | T | T | C | T | 26 | 23 |
| Grik1 | X66118 | yes | G | A | T | A | G | A | G | G | G | A | 0 | 0 |
| ll10rb | U53696 | no | A | A | C | A | T | T | T | T | G | G | 0 | 0 |
| Sod1 | M35725 | yes | A | G | A | A | A | C | A | A | G | A | 7 | 10 |
| Tiam1 | U05245 | yes | A | T | G | T | G | T | C | T | A | T | 1 | 0 |
| Cbfa2 | D13802 | yes | C | A | C | A | G | A | C | C | C | C | 0 | 0 |
| Mak-V | AF055919 | no | A | G | T | A | A | G | G | A | C | T | 0 | 1 |
| Synp | No mouse homolog | |||||||||||||
| Rack17 | No mouse homolog | |||||||||||||
| lfnar2 | AF013486 | yes | G | A | G | A | G | C | T | A | C | G | 3 | 0 |
| lfngt1 | No mouse homolog | |||||||||||||
| C21orf4 | No mouse homolog | |||||||||||||
| Gart | U01024 | yes | G | C | C | A | A | A | C | T | G | A | 1 | 1 |
| Son | AF1935606 | yes | T | G | T | A | T | T | A | C | A | G | 1 | 0 |
| Itsn Esi1 | AF132478 | no | G | A | C | C | C | C | A | G | C | C | 0 | 0 |
| Itsn Esi1L | AF132481 | no | A | G | G | T | C | C | C | C | A | C | 0 | 0 |
| Atp5o | No mouse homolog | |||||||||||||
| Slc5a3 | NM_017391 | no | T | T | T | G | T | T | T | A | T | T | 0 | 0 |
| Mirp1 | No mouse homolog | |||||||||||||
| Kcnq1 | U70068 | yes | T | G | C | A | G | C | C | T | G | C | 0 | 1 |
| Dscr1 | No mouse homolog | |||||||||||||
| Clic3 | No mouse homolog | |||||||||||||
| Ifngr2 | U69599 | yes | C | C | T | T | T | A | T | T | C | C | 3 | 0 |
| Cbr | U31966 | yes | G | T | G | A | A | C | C | C | A | A | 9 | 3 |
| Sim2 | D64135 | yes | T | T | G | T | G | T | G | T | A | A | 0 | 0 |
| Ttc3-Tprd | AB008516 | yes | C | C | T | T | A | C | A | C | T | T | 4 | 4 |
| Dyrk1a | U58497 | no | G | T | C | G | A | C | G | C | G | G | 0 | 0 |
| Kcnj6 | U51122 | yes | T | G | T | G | A | G | A | T | G | C | 0 | 0 |
| Erg | S66169 | no | G | G | C | T | C | C | T | A | T | C | 0 | 0 |
| Ets2 | J04103 | no | C | C | A | T | C | C | T | G | G | G | 0 | 2 |
| Hmg14 | X53476 | yes | T | A | A | T | A | A | A | A | A | T | 1 | 0 |
| Pcp4 | X17320 | yes | A | A | G | A | G | A | A | A | C | C | 46 | 39 |
| Dscam | No mouse homolog | |||||||||||||
| Mx1 | M12279 | yes | T | G | T | T | T | G | C | T | T | C | 1 | 0 |
| Mx2 | J03368 | yes | C | T | C | C | A | G | C | T | C | C | 0 | 0 |
For each gene (Gene name, GenBank no.) the corresponding most 3′ tag was used to determine the tag frequency in SAGE libraries derived from normal or Ts65Dn mouse male brains.