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. 2011 Jun 20;108(27):11199–11204. doi: 10.1073/pnas.1107729108

Fig. 3.

Fig. 3.

Phylogenetic analysis of viral sequences from cells and plasma. Maximum likelihood trees of plasma (open circles) and cell-derived sequences (filled circles) from early HIV infection (patient 2) (A), chronic HIV infection (patient 7, time point 1) (B), and patient 9, the longest-infected patient (C). All trees are rooted to pNL43 (open square). Colored triangles denote sequences from different wells in the same row.