Table 5. Statistical Data of QSAR Method with CoMSIA against Antiproliferative Activity on HT-29, M21, and MCF7 Cells.
CoMSIA 1 |
CoMSIA 2 |
|||||
---|---|---|---|---|---|---|
model Aa (HT-29) | model Ba (M21) | model Ca (MCF7) | model Da (HT-29) | model Ea (M21) | model Fa (MCF7) | |
fields and parametersb | CoMSIA FF, similarity, IM2, LogP, MW | CoMSIA FF, similarity, IM2, LogP, MW | CoMSIA FF, similarity, IM2, LogP, MW | CoMSIA FF, MR | CoMSIA FF, MR | CoMSIA FF, MR |
q2 c | 0.684 | 0.660 | 0.670 | 0.618 | 0.619 | 0.569 |
r2cv d | 0.697 | 0.668 | 0.680 | 0.612 | 0.609 | 0.551 |
STEPloo e | 0.520 | 0.541 | 0.518 | 0.584 | 0.579 | 0.601 |
ONC f | 6 | 6 | 6 | 6 | 6 | 6 |
SEENoValidation g | 0.350 | 0.352 | 0.352 | 0.308 | 0.302 | 0.318 |
r2 | 0.863 | 0.859 | 0.852 | 0.893 | 0.896 | 0.879 |
F h | 71.406 (n1 = 6, n2 = 68) | 95.801 (n1 = 6, n2 = 68) | 70.591 (n1 = 6, n2 = 68) | 94.985 (n1 = 6, n2 = 68) | 97.938 (n1 = 6, n2 = 68) | 82.390 (n1 = 6, n2 = 68) |
Models A, B, and C are optimized CoMSIA models with similarity descriptor. Models D, E, and F are CoMSIA models without similarity descriptor.
CoMSIA FF: steric, electrostatic, hydrophobic, donor, acceptor.
q2 = cross-validated correlation coefficient from LOO.
r2cv = cross-validated correlation coefficient (10 groups).
STEP = standard error of prediction.
ONC = optimal number of components.
SEE = standard error of estimate.
F = r2/(1 – r2).