Table 2.
Serotype, Multilocus Sequence Typing, and Pulsed-Field Gel Electrophoresis Type Diversity Among Clinical Bovine and Human Salmonella Isolates
|
No. of subtypes found among |
Simpson's index of diversity scores among |
|||||
---|---|---|---|---|---|---|---|
Human isolates only | Bovine isolates only | Both human and bovine isolates | Total | Human isolates | Bovine isolates | Total | |
Serotype (SrT) | 35 | 5 | 11 | 51 | 0.933 | 0.823 | 0.913 |
MLST | 57 | 6 | 10 | 73 | 0.941 | 0.805 | 0.920 |
PFGE | 116 | 44 | 7 | 167 | 0.991 | 0.968 | 0.991 |
SrT+PFGEa | 117 | 48 | 7 | 172 | 0.991 | 0.974 | 0.992 |
MLST+PFGEa | 119 | 45 | 6 | 170 | 0.992 | 0.968 | 0.991 |
SrT+MLST+PFGEa | 119 | 49 | 6 | 174 | 0.992 | 0.974 | 0.992 |
Isolates were also assigned unique subtypes based on combinations of (i) serotype (SrT) and PFGE type data, (ii) MLST and PFGE type data, and (iii) serotype (SrT), MLST, and PFGE type data.
MLST, multilocus sequence typing.