Table 2.

Robust CLOGIT Analysis of Associations in El-Rugab Village, Sudan, and in Brazil

Marker	Disease-associated allele	Allele frequency	No. of case-pseudocontrol sets	Pa	OR (95% CI)
El-Rugan village, Sudan
PHF10/rs4073926	T	0.44	37	.010b	2.45 (1.24–4.86)
PHF10/rs9371126	T	0.75	43	.809	1.14 (0.39–3.37)
C6orf70/rs4145078	G	0.3	54	.154	1.67 (0.83–3.36)
C6orf70/rs4716396	C	0.37	58	.043b	2.07 (1.02–4.21)
DLL1/rs1028488	G	0.51	48	.355	1.21 (0.81–1.80)
DLL1/rs1884190	T	0.56	22	.085	1.5 (0.95–2.38)
DLL1/rs2738822	T	0.39	35	.021b	1.75 (1.09–2.82)
DLL1/rs2738820	A	0.32	46	.019b	1.69 (1.09–2.62)
DLL1/rs9459988	T	0.52	49	.004b	2.20 (1.29–3.76)
DLL1/rs17860704	C	0.81	31	.001b	3.25 (1.61–6.57)
FAM120B/rs9366198	C	0.55	65	.203	1.39 (0.84–2.31)
FAM120B/rs9460106	C	0.48	46	>.999	1 (0.53–1.90)
FAM120B/2103816	A	0.43	53	.192	1.38 (0.85–2.22)
FAM120B/rs9295407	A	0.91	39	.071	3.5 (0.9–13.6)
PSMB1/rs6914744	C	0.29	56	.008b	2.40 (1.25–4.60)
PSMB1/rs12717	C	0.26	58	.254	1.57 (0.72–3.42)
TBP/rs13207114	G	0.4	51	.026b	1.79 (1.07–2.99)
TBP/rs6937840	G	0.21	67	.91	1.05 (0.47–2.32)
Brazil
PHF10/rs4073926	C	0.49	59	.903	1.04 (0.55–1.95)
C6orf70/rs4145078	A	0.68	39	.804	1.07 (0.62–1.85)
DLL1/rs2738822	T	0.46	79	.383	1.24 (0.77–1.98)
DLL1/rs2738820	A	0.46	94	.56	1.14 (0.73–1.79)
DLL1/rs9459988	G	0.13	76	.402	1.56 (0.55–4.38)
DLL1/rs17860704	C	0.91	80	.047b	3 (1.01–8.86)
PSMB1/rs6914744	A	0.62	45	.131	1.53 (0.88–2.65)
TBP/rs13207114	A	0.67	56	.428	1.27 (0.7–2.31)

NOTE. Robust CLOGIT odds ratios (ORs) and 95% confidence intervals (CIs) for allele-wise associations are shown. Single-nucleotide polymorphisms genotyped in the Brazilian sample were those with evidence for positive associations in El-Rugab village in Sudan.

^aOne degree of freedom.

^bPositive associations at nominal P < .05.