Table 3.

Distribution of appressoria small RNAs with perfect map to nuclear and mitochondria genomes.

	Alignmenta			Read Countb			Proratedc			Featuresd
	Total	Sense	Antisense	Total	Sense	Antisense	Total	Sense	Antisense	Mapped	Total	Coverage
Genome	27149	22116	6630	6352	6145	1311	6341	5768	361	1590	14880	11%
Genes	5117	2699	2846	2106	1633	1279	831	504	327	331	11043	3%
Introns	211	197	16	188	187	6	12	12	0	23	19651	0%
Exons	4965	2553	2840	2097	1545	1279	819	492	327	319	30705	1%
5' UTRe	1717	754	968	1220	737	678	398	226	172	70	11241	1%
EST Supp.	196	101	99	168	99	73	92	29	63	27	2558	1%
Unsupp.	1521	654	870	1057	641	606	306	197	109	45	8683	1%
CDS	307	256	53	278	255	27	165	146	19	160	30486	1%
EST Supp.	160	125	37	134	125	13	121	116	6	124	18154	1%
Unsupp.	147	132	17	147	132	17	44	31	13	36	12332	0%
3' UTR	3244	1687	1979	1193	882	928	256	119	136	101	11076	1%
EST Supp.	45	36	13	21	20	7	10	8	2	24	2551	1%
Unsupp.	3199	1652	1967	1174	865	924	246	112	134	78	8525	1%
tRNAf	8732	8459	275	1984	1983	3	1629	1627	2	317	341	93%
5' Leader	290	290	1	112	112	1	30	30	0	14	341	4%
Mature	8437	8437	1	1961	1961	1	1534	1534	0	177	341	52%
3' Term	957	684	275	398	397	3	65	63	2	168	341	49%
rRNA	9777	9775	4	3802	3801	3	3603	3601	2	47	48	98%
5.8 S	427	427	1	355	355	1	355	355	0	3	3	100%
8 S	3446	3446	1	99	99	1	70	70	0	41	41	100%
18 S	649	649	2	649	649	2	509	508	1	1	2	50%
28 S	5255	5254	3	2699	2699	2	2670	2669	1	2	2	100%
snRNA	7	7	1	5	5	1	3	3	0	4	14	29%
Transposable Elements	7046	3470	3578	71	34	39	63	33	30	891	3448	26%
Intergenic	1112	-	-	438	-	-	212	-	-	-	-	-
Mitochondria	39	38	2	39	38	2	29	27	1	23	37	62%
Genes	17	17	2	17	17	2	7	6	1	8	15	53%
CDS	2	2	1	2	2	1	1	1	0	2	16	13%
tRNA	17	17	1	17	17	1	8	8	0	13	20	65%
Mature	11	11	1	11	11	1	4	4	0	6	20	30%
rRNA	18	18	1	18	18	1	14	14	0	2	2	100%
Intergenic	1	-	-	1	-	-	1	-	-	-	-	-

^a Alignment refers to the summation of small RNA alignments to any genomic feature.

^b Read Count represents the summation of distinct reads mapping to a given feature. Noteworthy the values for each genome feature are generally less than the sum of its sub-features due to the small RNAs mapping to multiple features (See "Material and Methods" for more details).

^c Prorated apportions the weight of any small RNA between alignments and features.

^d Features represent the proportion of genomic features mapped by small RNAs where mapped indicates the number of members for each genomic feature mapped by small RNAs among the total possible.

^e Values indicate number of small RNAs that mapped to sub-features within gene models that are supported by ESTs (EST Supp.) or have no EST supporting evidence (Unsupp.).

^f tRNA entries include pseudo-tRNAs.