Table 2.
Top 20 SSR motifs in grape ESTs and genomic sequences
| EST-SSR repeats | Total | % | Genomic SSR repeats | Total | % |
|---|---|---|---|---|---|
| AG/CT | 1,217 | 17.9 | AT/AT | 444 | 33.0 |
| AGG/CCT | 957 | 14.0 | AAT/ATT | 251 | 18.6 |
| AT/AT | 575 | 8.4 | AG/CT | 208 | 15.5 |
| AAG/CTT | 547 | 8.0 | AAAT/ATTT | 94 | 7.0 |
| AAT/ATT | 403 | 5.9 | AAAAT/ATTTT | 51 | 3.8 |
| ACC/GGT | 326 | 4.8 | AAG/CTT | 48 | 3.6 |
| AGC/CGT | 237 | 3.5 | AC/GT | 47 | 3.5 |
| ACG/CTG | 201 | 2.9 | AAAAAT/ATTTTT | 21 | 1.6 |
| AGT/ATC | 201 | 2.9 | AAAAG/CTTTT | 17 | 1.3 |
| AAAAT/ATTTT | 195 | 2.9 | AAAAAG/CTTTTT | 15 | 1.1 |
| ACT/ATG | 168 | 2.5 | AATT/AATT | 14 | 1.0 |
| AAC/GTT | 163 | 2.4 | AAAG/CTTT | 13 | 1.0 |
| AGGGTC/AGTCCC | 144 | 2.1 | AGT/ATC | 12 | 0.9 |
| AAAAG/CTTTT | 98 | 1.4 | ACAT/ATGT | 10 | 0.7 |
| AAAAC/GTTTT | 97 | 1.4 | ACT/ATG | 9 | 0.7 |
| AAAT/ATTT | 89 | 1.3 | AGAT/ATCT | 8 | 0.6 |
| AAGG/CCTT | 88 | 1.3 | AAC/GTT | 7 | 0.5 |
| AAAGG/CCTTT | 88 | 1.3 | AAAAC/GTTTT | 6 | 0.4 |
| ACCCTG/ACTGGG | 81 | 1.2 | AAATT/AATTT | 6 | 0.4 |
| AAAAAG/CTTTTT | 78 | 1.1 | AGG/CCT | 5 | 0.4 |
| Other motifs | 862 | 12.6 | Other motifs | 60 | 4.5 |
| Total | 6,815 | 100.0 | 1,346 | 100.0 |