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. 2001 Apr 15;29(8):e43. doi: 10.1093/nar/29.8.e43

Table 1. Sequence of typical STM primers and the tags from which they were derived.

Tag no.
Tag sequence (5′→3′)
STM primer sequence
Tm (°C)a
Cycle no.b
9 GTGCAGAGACCATTGCGTTCAC GCAGAGACCATTGCGTTCAC 58.7 30
43 GTGCAGCAGCGAACAGGTGGCG CTGCAGCAGCGAACAGGTG 60.6 20
46 GTGCAGCAGGGCTAAACTCCAG CCAGCAGGGCTAAACTCCAG 60.0 30
62 GTGCAGCGAGCAGGTGGCGTAG CTGCAGCGAGCAGGTGGCGTAG 69.8 20
67 GTGCAGCGGCAAGAGGAGCAGG CTGCAGCGGCAAGAGGAGCAG 67.8 20
123 GTGCAGACATCATGCGTGACTG CTGCAGACATCATGCGTGACTG 62.1 30
135 GTGCAGATCGAGGTTTGCGTCC CTGCAGATCGAGGTTTGCGTC 62.9 30
189 GTGCAGCCTTGTCTTTACTTGG CTGCAGCCTTGTCTTTACTTG 55.4 35
210 GTGCAGCTCCACCACATCTCCG CTGCAGCTCCACCACATCTCC 62.5 35
297 GTGCAGCAAAAGACTTCAGTGC CTGCAGCAAAAGACTTCAGTGC 60.2 30
298 GTGCAGAGACCATTGCGTTCAC CTGCAGAGACCATTGCGTTCAC 62.8 30
313 GTGCAGATCGTGATCCATGTTC CTGCAGATCGTGATCCATGTTC 60.1 35
639 GTGCAGATTTTTCCAACTTCAG CTGCAGATTTTTCCAACTTCAG 57.0 35
764 GTGCAGCAACACACGGGAAGAT CTGCAGCAACACACGGGAAGA 64.1 25
773 GTGCAGCTGAGGACACTCTTCA CTGCAGCTGAGGACACTCTTCA 60.1 30
804 GTGCAGCTGAGCTGGCGCTTTC CTGCAGCTGAGCTGGCGCTTTC 69.2 35

aMelting temperature of the STM primer, as determined by NetPrimer.

bNumber of PCR cycles performed with final annealing at 57°C to amplify target SSR loci from genomic DNA.