Table 1. Sequence of typical STM primers and the tags from which they were derived.
Tag no. |
Tag sequence (5′→3′) |
STM primer sequence |
Tm (°C)a |
Cycle no.b |
9 | GTGCAGAGACCATTGCGTTCAC | GCAGAGACCATTGCGTTCAC | 58.7 | 30 |
43 | GTGCAGCAGCGAACAGGTGGCG | CTGCAGCAGCGAACAGGTG | 60.6 | 20 |
46 | GTGCAGCAGGGCTAAACTCCAG | CCAGCAGGGCTAAACTCCAG | 60.0 | 30 |
62 | GTGCAGCGAGCAGGTGGCGTAG | CTGCAGCGAGCAGGTGGCGTAG | 69.8 | 20 |
67 | GTGCAGCGGCAAGAGGAGCAGG | CTGCAGCGGCAAGAGGAGCAG | 67.8 | 20 |
123 | GTGCAGACATCATGCGTGACTG | CTGCAGACATCATGCGTGACTG | 62.1 | 30 |
135 | GTGCAGATCGAGGTTTGCGTCC | CTGCAGATCGAGGTTTGCGTC | 62.9 | 30 |
189 | GTGCAGCCTTGTCTTTACTTGG | CTGCAGCCTTGTCTTTACTTG | 55.4 | 35 |
210 | GTGCAGCTCCACCACATCTCCG | CTGCAGCTCCACCACATCTCC | 62.5 | 35 |
297 | GTGCAGCAAAAGACTTCAGTGC | CTGCAGCAAAAGACTTCAGTGC | 60.2 | 30 |
298 | GTGCAGAGACCATTGCGTTCAC | CTGCAGAGACCATTGCGTTCAC | 62.8 | 30 |
313 | GTGCAGATCGTGATCCATGTTC | CTGCAGATCGTGATCCATGTTC | 60.1 | 35 |
639 | GTGCAGATTTTTCCAACTTCAG | CTGCAGATTTTTCCAACTTCAG | 57.0 | 35 |
764 | GTGCAGCAACACACGGGAAGAT | CTGCAGCAACACACGGGAAGA | 64.1 | 25 |
773 | GTGCAGCTGAGGACACTCTTCA | CTGCAGCTGAGGACACTCTTCA | 60.1 | 30 |
804 | GTGCAGCTGAGCTGGCGCTTTC | CTGCAGCTGAGCTGGCGCTTTC | 69.2 | 35 |
aMelting temperature of the STM primer, as determined by NetPrimer.
bNumber of PCR cycles performed with final annealing at 57°C to amplify target SSR loci from genomic DNA.