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. 2011 May;193(10):2608–2618. doi: 10.1128/JB.00107-11

Table 1.

Characteristics of Agrobacterium species strains of clinical origina,g

Strainb Genovar within clade A ST Allelic profilei
 Growth (42°C)f 3-Ketolactose productionf PDA CaCO3f,h Origin of strain Place, yr of isolation
atpD dnaK glnA groEL rpoB trpE zwf
AGR01 A7 3 3 5 7 3 31 2 5 + − − Scalp wound Montpellier, Fr, 2003
AGR35 A7 3 3 5 7 3 31 2 5 + − − Sputumd Montpellier, Fr, 2009
AGR38 A7 3 3 5 7 3 31 2 5 + − − Sputumd Montpellier, Fr, 2009
AGR40 A7 3 3 5 7 3 31 2 5 − − − Blood Montpellier, Fr, 2009
AGR02 A7 4 3 6 10 4 1 3 6 + − − Urine Montpellier, Fr, 2004
AGR03 A7 5 18 7 10 5 2 5 7 + + − Urine Montpellier, Fr, 2004
AGR04 A7 5 18 7 10 5 2 5 7 + + − Undocumentede Nimes, Fr, 2004
AGR17 A7 5 18 7 10 5 2 5 7 + + − Sputumd Montpellier, Fr, 2006
AGR24 A7 5 18 7 10 5 2 5 7 + + − Sputumd Montpellier, Fr, 2008
AGR33 A7 5 18 7 10 5 2 5 7 − − − Sputumd Montpellier, Fr, 2009
AGR41 A7 5 18 7 10 5 2 5 7 + + − Glans penis Montpellier, Fr, 2009
AGR05 A7 6 3 6 12 4 1 3 6 + − − Fiberscope rinse fluide Toulouse, Fr, 1997
AGR07 A7 6 3 6 12 4 1 3 6 + + − Undocumentede Toulouse, Fr, 1998
AGR09 A7 6 3 6 12 4 1 3 6 + − − Collyree Montpellier, Fr, 1995
AGR15 A7 6 3 6 12 4 1 3 6 + − − Sputumd Montpellier, Fr, 2005
AGR20 A7 6 3 6 12 4 1 3 6 + − − Sputumd Montpellier, Fr, 2007
AGR21 A A7 6 3 6 12 4 1 3 6 + − − Sputumd Montpellier, Fr, 2007
AGR21 B A7 6 3 6 12 4 1 3 6 + − − Sputumd Montpellier, Fr, 2007
CCUG 48648 A7 6 3 6 12 4 1 3 6 + + − Blood Stockholm, Sweden, 2004
AGR06 A7 7 4 8 5 6 3 22 8 + + − Culture mediume Toulouse, Fr, 1997
AGR10 A7 8 5 9 9 7 4 9 9 + + − Sputumd Montpellier, Fr, 2005
AGR18 A7 8 5 9 9 7 4 9 9 + − − Sputumd Montpellier, Fr, 2006
AGR11 A7 9 10 10 9 8 5 6 6 + − − Sputum Nimes, Fr, 2005
AGR16 A7 9 10 10 9 8 5 6 6 + − − Feces Montpellier, Fr, 2006
AGR26 A7 9 10 10 9 8 5 6 6 + − − Sputum Montpellier, Fr, 2008
AGR27 A7 9 10 10 9 8 5 6 6 + ND ND Sputum Montpellier, Fr, 2008
AGR37 A7 9 10 10 9 8 5 6 6 + − − Sputumd Montpellier, Fr, 2009
AGR39 A7 9 10 10 9 8 5 6 6 + − − Sputum Montpellier, Fr, 2009
CCUG 49619 A7 9 10 10 9 8 5 6 6 + − − Bronchus brush rinse Göteborg, Sweden, 2004
AGR12 A7 10 3 5 7 3 32 2 5 + − − Toe wound Montpellier, Fr, 2005
AGR14 A7 11 6 11 6 8 7 8 11 + − − Sputumd Montpellier, Fr, 2006
AGR23 A7 11 6 11 6 8 7 8 11 + − − Blood Toulouse, Fr, 2006
AGR43 A7 11 6 11 6 8 7 8 11 + − − Sputumd Montpellier, Fr, 2009
AGR19 A7 12 7 5 11 16 5 10 12 + + − Blood Montpellier, Fr, 2007
CCUG 12509 A7 13 4 22 12 16 14 5 21 + + − Lesion Texas, 1974
AGR25 A7 13 4 22 12 16 14 5 21 + − − Feces Montpellier, Fr, 2008
AGR32 A7 15 8 25 8 19 3 9 23 + − − Sputumd Montpellier, Fr, 2009
AGR34 A7 16 9 8 5 8 28 8 5 + − − Sputumd Montpellier, Fr, 2009
AGR08 A7 18 3 3 7 3 33 1 5 + − − Sputumd Montpellier, Fr, 2005
LMG 361.1 A7 37 30 32 24 25 27 29 11 + + − Sputum Missouri, NA
LMG 378 A7 38 7 5 9 16 5 10 12 + + − Blood Georgia, NA
LMG 399 A7 39 9 8 5 26 28 8 7 + + − Infected eye Louisiana, NA
LMG 355 A7 48 3 5 7 3 36 2 5 − + − Bronchial washings Hawaii, NA
AGR28 A2 14 11 23 13 17 15 11 22 − + − Blood Montpellier, Fr, 2008
AGR29 A2 14 11 23 13 17 15 11 22 − + − Blood Montpellier, Fr, 2008
AGR30 A2 14 11 23 13 17 15 11 22 − + − Blood Montpellier, Fr, 2008
AGR13 A4 2 17 4 3 9 6 7 10 − + − Sputumd Montpellier, Fr, 2005
AGR36 A4 17 17 4 3 9 23 7 10 − + − Sputumd Montpellier, Fr, 2009
LMG 227c A3 28 16 16 18 10 12 16 4 − + − Blood Denmark, before 1972
a

Results are presented by genovar within clade A and then by ST.

b

All reference strains were purchased as Agrobacterium (Rhizobium) radiobacter (A. tumefaciens) strains from the corresponding collection.

c

Biovar 1.

d

From cystic fibrosis patients.

e

Probable human origin.

f

+, positive for the test; −, negative for the test; ND, not determined.

g

CCUG, Culture Collection University of Göteborg; LMG, Laboratorium voor Microbiologie Universiteit Gent; Fr, France; NA, not available.

h

PDA CaCo3, differential production of acid from a glucose-containing medium associated with differential dissolution of CaCo3.

i

For each locus, each different allele was assigned an arbitrary number.