Table 2.
| Strain/biovarb | Genovar within clade A | ST | Allelic profileg |
Growth (42°C)d | 3-Ketolactose productiond | PDA CaCO3d,e | Phytopathogenicityc,d | Origin of strain | Place, yr of isolationf | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| atpD | dnaK | glnA | groEL | rpoB | trpE | zwf | |||||||||
| 181 | A3 | 26 | 21 | 14 | 23 | 12 | 10 | 24 | 15 | − | − | − | + | Populus, tumor | New York, UD |
| RTG2 | A3 | 27 | 15 | 15 | 17 | 10 | 11 | 15 | 16 | − | + | − | − | Lycopersicon esculentum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTE4 | A3 | 27 | 15 | 15 | 17 | 10 | 11 | 15 | 16 | − | + | − | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTB12 | A3 | 27 | 15 | 15 | 17 | 10 | 11 | 15 | 16 | − | + | − | − | Lycopersicon esculentum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| LMG 232/bv1 | A3 | 28 | 16 | 16 | 18 | 10 | 12 | 16 | 4 | − | + | − | − | Beta vulgaris, rhizosphere | United Kingdom, 1963 |
| RTB1 | A3 | 28 | 16 | 16 | 18 | 10 | 12 | 16 | 4 | − | + | − | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTB8 | A3 | 28 | 16 | 16 | 18 | 10 | 12 | 16 | 4 | − | + | − | − | Lycopersicon esculentum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTP7 | A3 | 28 | 16 | 16 | 18 | 10 | 12 | 16 | 4 | − | + | − | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTP1 | A3 | 28 | 16 | 16 | 18 | 10 | 12 | 16 | 4 | − | + | − | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTP2 | A3 | 28 | 16 | 16 | 18 | 10 | 12 | 16 | 4 | − | ND | ND | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTB7 | A3 | 30 | 24 | 18 | 16 | 10 | 12 | 18 | 18 | − | + | − | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| RTA10 | A3 | 31 | 22 | 19 | 17 | 10 | 12 | 19 | 19 | − | + | − | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| LMG 142/bv1 | A3 | 34 | 22 | 19 | 17 | 10 | 12 | 19 | 29 | − | + | − | − | soil | Netherlands or Germany, 1904 |
| LMG 197/bv1 | A3 | 35 | 28 | 12 | 19 | 10 | 8 | 13 | 13 | − | + | − | + | Malus sp., tumor | Wisconsin, 1935 |
| LMG 175/bv1 | A3 | 35 | 28 | 12 | 19 | 10 | 8 | 13 | 13 | − | ND | ND | + | Prunus cerasifera, tumor | North Bulgaria, 1959 |
| LMG 90/bv1 | A3 | 40 | 31 | 15 | 25 | 23 | 29 | 27 | 30 | + | + | − | + | Rosa sp. cv. Golden Rapture, tumor | New York, UD |
| A6 | A3 | 41 | 23 | 12 | 19 | 10 | 8 | 13 | 13 | − | + | − | + | apple tree, tumor | United States, UD |
| R10 | A3 | 41 | 23 | 12 | 19 | 10 | 8 | 13 | 13 | − | + | − | + | NA, tumor | United States, UD |
| LMG 167/bv1 | A3 | 45 | 35 | 16 | 18 | 10 | 12 | 16 | 4 | − | + | − | + | Prunus sp., tumor | Gembloux, Belgium, UD |
| LMG 303/bv1 | A3 | 45 | 35 | 16 | 18 | 10 | 12 | 16 | 4 | − | ND | ND | + | Chrysanthemum frutescens, tumor | Germany, 1927 |
| C58 | A5 | 20 | 1 | 1 | 20 | 1 | 20 | 1 | 1 | − | + | − | + | Prunus sp. cv. Montmorency tumor | New York, 1958 |
| CCUG 50385B | A5 | 22 | 27 | 30 | 20 | 22 | 25 | 26 | 28 | − | + | − | ND | Soil | Chile, 2004 |
| T37 | A5 | 25 | 12 | 13 | 20 | 11 | 9 | 14 | 14 | − | + | − | + | Juglans regia, tumor | California, 1926 |
| H100 | A5 | 25 | 12 | 13 | 20 | 11 | 9 | 14 | 14 | − | ND | ND | + | Humulus lupulus, tumor | United States, UD |
| AB35-9 | A4 | 2 | 17 | 4 | 3 | 9 | 6 | 7 | 10 | − | − | − | ND | Nematode | Avignon, Fr, 2007 |
| B10-2 | A4 | 2 | 17 | 4 | 3 | 9 | 6 | 7 | 10 | − | − | − | ND | Nematode | Avignon, Fr, 2007 |
| RTP8 | A4 | 32 | 13 | 20 | 4 | 14 | 6 | 20 | 20 | − | + | − | − | Nicotiana tabacum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| CFBP 2414T | A1 | 23 | 20 | 21 | 15 | 15 | 13 | 21 | 32 | − | + | − | − | Ditch water | Netherlands, before 1927 |
| LMG 306/bv1 | A1 | 36 | 29 | 31 | 22 | 24 | 26 | 28 | 31 | − | + | − | + | Prunus sp., tumor | Saitama, Japan, 1956 |
| RTH4 | A6 | 29 | 14 | 17 | 14 | 13 | 18 | 17 | 17 | − | + | − | − | Lycopersicon esculentum, rhizosphere | Gif-sur-Yvette, Fr, 2006 |
| A. vitis S4 | 1 | 25 | 26 | 2 | 20 | 22 | 25 | 24 | ND | ND | ND | + | Vitis vinifera, tumor | Hungary, UD | |
| LMG 109/bv2 | 19 | 34 | 35 | 28 | 30 | 21 | 32 | 2 | − | − | + | + | Rosa sp., tumor | Texas, UD | |
| LMG 29/bv2 | 21 | 33 | 38 | 27 | 28 | 35 | 31 | 33 | − | − | − | + | Rosa xanthina, tumor | United Kingdom, UD | |
| LMG 253/bv2 | 24 | 34 | 37 | 28 | 30 | 21 | 4 | 2 | − | − | + | + | Prunus persica, tumor | Greece, UD | |
| K84/bv2 | 33 | 2 | 2 | 1 | 2 | 21 | 4 | 2 | − | − | + | − | Prunus persic, soil around tumor | Australia, 1972 | |
| LMG 341/bv2 | 42 | 34 | 37 | 28 | 29 | 21 | 4 | 2 | − | − | + | + | Prunus dulcis, tumor | Israel, UD | |
| LMG 63/bv2 | 43 | 34 | 34 | 28 | 29 | 21 | 4 | 2 | − | − | + | − | Malus sylvestris, hairy root | United States, UD | |
| LMG 99/bv2 | 44 | 34 | 35 | 29 | 30 | 21 | 4 | 2 | − | − | + | + | Rosa sp., tumor | Pennsylvania, UD | |
| LMG 229/bv2 | 46 | 36 | 36 | 28 | 30 | 21 | 32 | 2 | − | − | + | + | Rosa sp., tumor | South Africa, UD | |
| A. vitis LMG 8750T | 47 | 37 | 27 | 30 | 31 | 34 | 33 | 34 | − | − | − | + | Vitis vinifera, tumor | Australia, 1977 | |
Results are presented by genovar within clade A and/or by ST.
All type and reference strains were purchased as Agrobacterium (Rhizobium) radiobacter (A. tumefaciens) strains from the corresponding collection, except for A. vitis S4, A. vitis LMG 8750T, and A. rhizogenes LMG 63.
Phytopathogenicity data for collection strains were obtained from the corresponding collection databases and from references 6, 22, 24, and 30.
+, positive for the test; −, negative for the test; ND, not determined.
PDA CaCo3, differential production of acid from a glucose-containing medium associated with differential dissolution of CaCo3.
LMG, Laboratorium voor Microbiologie Universiteit Gent; CCUG, Culture Collection University of Göteborg; CFBP, Collection Française des Bactéries Phytopathogènes; bv, biovar when available for Agrobacterium (Rhizobium) strains from LMG collection; Fr, France; UD, undocumented.
For each locus, each different allele was assigned an arbitrary number.