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. 2011 Mar 7;2:41. doi: 10.3389/fmicb.2011.00041

Table 3.

Changes in the transcript level for genes of selected metabolic pathways.

Locus tag Ratio high light/std Ratio dark oxic/std Ratio dark anoxic/std Ratio dark anoxic/dark oxic Ratio micro-oxic/std Gene name Gene product
GLYCOLYSIS
SYNPCC7002_A2438 1.31 1.51 0.29 0.19 0.93 glk Glucokinase
SYNPCC7002_A0964* 0.53 3.27 1.62 0.50 0.83 pgi Glucose-6-phosphate isomerase
SYNPCC7002_A0162* 0.39 2.95 0.80 0.27 0.46 pfkA 6-Phosphofructokinase PfkA
SYNPCC7002_A0886 0.06 1.48 0.08 0.05 0.75 – PfkB family of fructokinase
SYNPCC7002_A0329* 0.43 0.70 0.57 0.82 0.82 fbp Fructose-1,6-bisphosphatase
SYNPCC7002_A0010 0.85 4.41 1.05 0.24 0.71 fbaB Fructose-bisphosphate aldolase class I
SYNPCC7002_A2697 0.07 5.23 0.63 0.12 0.71 gap Glyceraldehyde-3-phosphate DH, type I
SYNPCC7002_A1585# 2.58 0.46 0.39 0.84 0.71 pgk Phosphoglycerate kinase
SYNPCC7002_A2233 1.03 1.23 0.27 0.22 1.10 gpm 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase
SYNPCC7002_A2560 1.66 0.34 0.26 0.76 1.16 gpmB Phosphoglycerate mutase
SYNPCC7002_A0073 2.30 0.50 0.11 0.21 0.79 eno 2-Phosphopyruvate hydratase (enolase)
PYRUVATE METABOLISM
SYNPCC7002_A1658 1.56 0.36 0.11 0.31 1.04 pyk Pyruvate kinase
SYNPCC7002_A0250 0.18 19.27 177.82 9.23 0.56 ppsA Phosphoenolpyruvate synthase
SYNPCC7002_A0353 1.47 0.38 0.10 0.25 1.41 pdhA Pyruvate dehydrogenase E1 alpha chain
SYNPCC7002_A0655 1.78 0.53 0.23 0.43 0.97 pdhB Pyruvate dehydrogenase E1 beta chain
SYNPCC7002_A1126 1.23 0.59 0.47 0.80 0.99 ipdA Dihydrolipoamide dehydrogenase
SYNPCC7002_A0110 1.52 0.40 0.11 0.27 0.89 – Dihydrolipoamide S-acetyltransferase
SYNPCC7002_A1443 0.33 24.68 107.55 4.36 0.86 nifJ Pyruvate:ferredoxin (flavodoxin) oxidoreductase
OXIDATIVE PENTOSE PHOSPHATE CYCLE
SYNPCC7002_A0964* 0.53 3.27 1.62 0.50 0.83 pgi Glucose-6-phosphate isomerase
SYNPCC7002_A1459 0.25 3.08 2.64 0.85 0.86 zwf Glucose-6-phosphate 1-dehydrogenase
SYNPCC7002_A0928 0.33 2.54 0.32 0.13 0.79 pgl 6-Phosphogluconolactonase
SYNPCC7002_A0221 0.39 3.55 3.46 0.97 0.65 gnd 6-Phosphogluconate DH, decarboxylating
SYNPCC7002_A1269$ 2.45 0.09 0.06 0.66 1.39 rpiA Ribose 5-phosphate isomerase A
SYNPCC7002_A0324$ 2.99 0.47 0.22 0.47 0.99 rpe Ribulose-phosphate 3-epimerase
SYNPCC7002_A1022$ 1.31 0.40 0.55 1.36 0.90 tkt Transketolase
SYNPCC7002_A0010* 0.85 4.41 1.05 0.24 0.71 fbaB Fructose-bisphosphate aldolase class I
SYNPCC7002_A0329* 0.43 0.70 0.57 0.82 0.82 fbp Fructose-1,6-bisphosphatase
SYNPCC7002_A0162* 0.39 2.95 0.80 0.27 0.46 pfkA 6-Phosphofructokinase PfkA
SYNPCC7002_A1460 0.31 3.38 5.53 1.64 0.79 tal Transaldolase
SYNPCC7002_A2558 1.38 0.59 0.44 0.74 0.99 talC Transaldolase
CBB CYCLE
SYNPCC7002_A1796 3.93 0.35 0.48 1.38 1.01 rbcS RuBisCO, small subunit
SYNPCC7002_A1798 3.07 0.28 0.35 1.24 0.96 rbcL RuBisCO, large subunit
SYNPCC7002_A1797 3.01 0.44 0.50 1.13 0.93 rbcX RbcX protein, RuBisCO chaperone
SYNPCC7002_A1585# 2.58 0.46 0.39 0.84 0.71 pgk Phosphoglycerate kinase
SYNPCC7002_A0106 1.94 0.25 0.04 0.17 1.00 gap Glyceraldehyde-3-phosphate DH, type I
SYNPCC7002_A1352 2.64 0.53 0.20 0.37 1.08 fba Fructose-bisphosphate aldolase, class II
SYNPCC7002_A0329 0.43 0.70 0.57 0.82 0.82 fbp Fructose-1,6-bisphosphatase
SYNPCC7002_A1301 2.34 0.34 0.10 0.31 0.81 glpX Bacterial fructose-1,6-bisphosphatase
SYNPCC7002_A1022$ 1.31 0.40 0.55 1.36 0.90 tkt Transketolase
SYNPCC7002_A0595 2.09 0.46 0.09 0.19 0.92 tpiA Triosephosphate isomerase
SYNPCC7002_A1269$ 2.45 0.09 0.06 0.66 1.39 rpiA Ribose 5-phosphate isomerase A
SYNPCC7002_A0324$ 2.99 0.47 0.22 0.47 0.99 rpe Ribulose-phosphate 3-epimerase
SYNPCC7002_A2857 2.34 0.39 0.03 0.09 1.15 prk Phosphoribulokinase
SYNPCC7002_A2665 1.36 1.10 0.40 0.36 1.05 prk Phosphoribulokinase
CO2 CONCENTRATION
SYNPCC7002_A1805 0.63 0.89 0.30 0.33 1.17 ndhF4 NADH DH subunit F4
SYNPCC7002_A1806 0.53 0.60 0.14 0.23 0.94 ndhD4 NADH DH subunit D4
SYNPCC7002_A1807 0.54 0.57 0.13 0.22 1.01 cupB CO2 hydration protein
SYNPCC7002_A0172 1.08 0.39 0.31 0.80 0.78 ndhF3 NADH DH (plastoquinone) chain 5
SYNPCC7002_A0173 1.76 0.27 0.35 1.30 1.03 ndhD3 NADH-quinone oxidoreductase (subunit 4)
SYNPCC7002_A0174 1.49 0.76 0.19 0.25 0.89 cupA CO2 hydration protein
SYNPCC7002_A0175 2.39 0.79 0.26 0.33 1.48 cupS Conserved hypothetical protein
SYNPCC7002_A0171 1.39 0.66 0.70 1.05 0.64 rbcR Transcription regulator RbcR
SYNPCC7002_A2371 0.96 1.15 1.25 1.09 0.76 bicA Bicarbonate transporter, BicA
SYNPCC7002_A0470 3.43 1.02 0.29 0.28 1.19 sbtA Sodium-dependent bicarbonate transporter
SYNPCC7002_A2612 1.55 0.62 0.07 0.11 0.90 ccmK CO2 concentrating mechanism protein
SYNPCC7002_A2613 1.71 0.61 0.51 0.84 0.59 ccmK CO2 concentrating mechanism protein
SYNPCC7002_A1802 2.22 0.37 0.02 0.06 1.05 ccmK CO2 concentrating mechanism protein
SYNPCC7002_A1803 3.56 0.46 0.03 0.07 1.33 ccmK CO2 concentrating mechanism protein
SYNPCC7002_A2389 0.95 1.59 1.59 1.00 0.49 ccmk1 CO2 concentrating mechanism protein
SYNPCC7002_A1801 1.92 0.38 0.03 0.07 1.29 ccmL CO2 concentrating mechanism protein
SYNPCC7002_A1800 2.69 0.31 0.04 0.14 0.80 ccmM CO2 concentrating mechanism protein
SYNPCC7002_A1799 1.57 0.15 0.05 0.35 1.35 ccmN CO2 concentrating mechanism protein
SYNPCC7002_A1997 2.27 0.60 0.15 0.26 0.96 icfA Carbonic anhydrase
PHOTOSYSTEM II
SYNPCC7002_A1418 2.03 0.73 0.20 0.27 1.12 psbA Photosystem q(b) protein
SYNPCC7002_A2164 0.71 0.57 0.62 1.08 0.86 psbA Photosystem q(b) protein
SYNPCC7002_A0157 5.20 0.70 1.17 1.67 1.00 psbA-II PS II D1 subunit PsbA-II (Qb protein)
SYNPCC7002_A1759 2.03 0.79 0.61 0.78 1.42 psbB PS II protein
SYNPCC7002_A1559 1.66 0.51 0.40 0.79 1.33 psbC PS II 44 kDa subunit reaction center protein
SYNPCC7002_A1560 1.81 0.50 0.22 0.45 1.49 psbD PS II D2 protein (photosystem q(a) protein)
SYNPCC7002_A2199 1.62 0.60 0.12 0.19 1.00 psbD PS II D2 protein
SYNPCC7002_A0230 1.25 0.57 0.13 0.24 0.68 psbE Cytochrome b559, alpha subunit (PsbE)
SYNPCC7002_A0231 0.82 0.33 0.26 0.78 0.62 psbF Cytochrome b559, beta subunit (PsbF)
SYNPCC7002_A0808 0.93 0.37 0.42 1.14 1.61 psbH Phosphoprotein of PS II
SYNPCC7002_A0233 1.02 0.56 0.40 0.72 1.24 psbJ PS II subunit PsbJ
SYNPCC7002_A2779 0.95 0.27 0.08 0.31 0.36 psbK PS II 4 kDa reaction center component
SYNPCC7002_A0232 0.85 0.39 0.29 0.74 0.79 psbL PS II subunit PsbL
SYNPCC7002_A2151 0.89 0.15 0.07 0.46 0.36 psbM PS II reaction center M protein
SYNPCC7002_A0809 4.54 0.36 0.22 0.61 1.14 psbN PS II reaction center N protein.-related protein
SYNPCC7002_A0269 1.72 0.17 0.17 1.03 2.25 psbO PS II manganese stabilizing protein PsbO
SYNPCC7002_A1303 0.73 0.68 0.22 0.33 1.73 psbP PsbP
SYNPCC7002_A0957 0.38 0.40 0.23 0.57 0.32 psbT PS II reaction center, PsbT protein
SYNPCC7002_A0322 1.11 0.39 0.07 0.18 1.47 psbU PS II 12 kDa extrinsic protein (PsbU)
SYNPCC7002_A0112 0.77 0.30 0.11 0.36 1.22 psbV Cytochrome c-550 precursor (cytochrome c550)
SYNPCC7002_A1258 0.90 0.65 0.30 0.46 0.64 psbW PS II reaction center W protein
SYNPCC7002_A1312 1.01 1.14 4.87 4.27 1.31 psbW2 PS II complex subunit
SYNPCC7002_A1347 1.95 0.44 0.19 0.43 1.97 psbY PS II PsbY protein
SYNPCC7002_A0135 1.17 0.18 0.27 1.51 1.10 psbZ PS II subunit PsbZ
SYNPCC7002_A2533 0.82 0.29 0.13 0.45 0.96 psbZ PS II 11 kDa protein
PHOTOSYSTEM I
SYNPCC7002_A1961 0.42 0.52 0.56 1.08 0.93 psaA PS I P700 chlorophyll A apoprotein A1
SYNPCC7002_A1962 0.56 0.39 1.21 3.08 1.50 psaB PS I protein A2
SYNPCC7002_A1589 0.32 0.17 0.06 0.33 0.62 psaC PS I iron-sulfur center subunit VII
SYNPCC7002_A0682 0.73 0.70 0.11 0.16 1.69 psaD PS I subunit II
SYNPCC7002_A1393 0.69 0.32 0.04 0.12 0.90 psaE PS I reaction center subunit IV
SYNPCC7002_A1008 1.31 0.49 0.12 0.25 2.14 psaF PSI reaction center subunit III, PsaF
SYNPCC7002_A2621 0.35 0.32 0.08 0.24 1.31 psaI PS I reaction center subunit VIII
SYNPCC7002_A1009 0.36 0.22 0.12 0.53 0.64 psaJ PS I reaction center, subunit IX/PsaJ
SYNPCC7002_A2401 0.28 0.30 0.04 0.13 1.29 psaK PS I reaction center subunit X
SYNPCC7002_A2620 0.35 0.44 0.02 0.04 1.12 psaL PS I reaction center subunit XI
SYNPCC7002_A1834 0.27 0.32 0.41 1.28 0.28 psaM PS I protein M
SYNPCC7002_A0975 1.92 0.38 0.19 0.49 0.92 btpA PS I biogenesis protein btpA
PHOTOSYNTHETIC ELECTRON TRANSPORT
SYNPCC7002_A1910 2.05 0.17 0.06 0.37 1.07 petA Apocytochrome f precursor
SYNPCC7002_A0842 2.27 0.68 0.13 0.19 1.31 petB Cytochrome b6
SYNPCC7002_A1909 2.25 0.19 0.14 0.74 1.25 petC Rieske FeS protein
SYNPCC7002_G0076 0.28 0.00 0.50 n.d. 0.00 petC-II Rieske iron-sulfur protein paralog
SYNPCC7002_A0841 1.30 0.60 0.12 0.21 1.13 petD cytb6/f complex subunit IV
SYNPCC7002_A1097 0.84 0.69 0.23 0.33 0.76 – Cytochrome b6/f complex, alt. iron-sulfur subunit
SYNPCC7002_A0374 1.41 0.22 0.07 0.30 0.74 petG Cytochrome b6-f complex subunit 5
SYNPCC7002_A1311 1.31 0.66 0.11 0.17 0.58 petM Cytochrome b6-f complex subunit VII
SYNPCC7002_A2391 1.55 0.86 0.50 0.58 1.10 petJ Cytochrome c6
SYNPCC7002_A0167 0.82 0.53 0.25 0.47 0.71 petJ Cytochrome c6 precursor (cytochrome c553)
SYNPCC7002_A0624 0.77 0.55 1.31 2.36 0.75 petF Ferredoxin 2Fe-2S II
SYNPCC7002_A2192 1.44 0.60 0.70 1.17 1.37 petF Ferredoxin (2Fe-2S)
SYNPCC7002_A2325 4.08 0.69 0.14 0.20 1.15 petF Ferredoxin
SYNPCC7002_A2326 2.81 0.40 0.11 0.27 1.53 petF Ferredoxin I (2Fe-2S)
SYNPCC7002_A2548 0.66 1.38 1.01 0.73 0.36 petF2 Ferredoxin PetF2
SYNPCC7002_A0853 2.17 0.29 0.21 0.72 1.35 petH Ferredoxin-NADP reductase
PHYCOBILISOMES, LYASES AND DEGRADATION
SYNPCC7002_A1930 0.67 0.20 0.05 0.23 1.55 apcA Allophycocyanin alpha subunit
SYNPCC7002_A1929 1.01 0.20 0.05 0.23 1.99 apcB Allophycocyanin, beta subunit
SYNPCC7002_A1928 0.49 0.26 0.07 0.26 0.78 apcC Allophycocyanin-associated core-linker
SYNPCC7002_A2140 0.86 0.89 0.33 0.37 1.27 apcD Allophycocyanin B alpha subunit
SYNPCC7002_A2009 0.51 0.51 0.27 0.52 1.41 apcE Phycobilisome core-membrane linker ApcE
SYNPCC7002_A1631 0.92 0.75 0.21 0.28 0.96 apcF Allophycocyanin beta-18 subunit
SYNPCC7002_A2210 0.53 0.25 0.10 0.40 2.46 cpcA Phycocyanin, alpha subunit
SYNPCC7002_A2209 0.39 0.13 0.03 0.21 1.82 cpcB Phycocyanin, beta subunit
SYNPCC7002_A2211 0.10 0.23 0.25 1.09 1.62 cpcC Phycocyanin-associated rod linker protein
SYNPCC7002_A2212 0.23 0.20 0.02 0.09 1.35 cpcD Phycocyanin-associated, rod-terminating linker
SYNPCC7002_A0811 0.45 0.42 0.12 0.29 1.22 cpcG1 Phycobilisome rod-core linker CpcG
SYNPCC7002_A0639 0.23 1.04 0.15 0.14 0.93 cpcG2 Phycocyanin-associated rod-core linker
SYNPCC7002_A2010 0.48 0.26 0.03 0.13 1.13 cpcM Phycobiliprotein beta subunit methylase CpcM
SYNPCC7002_A2213 0.51 0.20 0.03 0.14 0.94 cpcE Phycocyanin alpha subunit lyase, CpcE
SYNPCC7002_A2214 0.55 0.40 0.10 0.26 0.80 cpcF Phycocyanin alpha subunit lyase, CpcF
SYNPCC7002_A1822 1.07 0.74 0.13 0.18 1.03 cpcS Phycobiliprotein lyase
SYNPCC7002_A2053 0.68 1.19 7.95 6.66 0.76 cpcU Phycobiliprotein lyase
SYNPCC7002_A2095 1.67 0.55 0.16 0.28 1.80 cpcT Bilin lyase
SYNPCC7002_A2772 1.67 0.36 0.39 1.06 0.96 cpcV Similar to phycobiliprotein lyase CpcS and CpcU
SYNPCC7002_A1821 2.17 4.77 0.75 0.16 1.21 nblA Phycobilisome degradation protein
SYNPCC7002_A0348 0.79 2.68 6.62 2.47 1.02 nblB Phycobiliprotein lyase related protein
PORPHYRIN/CHLOROPHYLL BIOSYNTHESIS
SYNPCC7002_A1302 0.66 0.47 0.15 0.32 1.45 hemA Glutamyl-tRNA reductase
SYNPCC7002_A2206 1.69 0.47 0.09 0.19 0.69 hemL Glutamate-1-semialdehyde-2,1-aminomutase
SYNPCC7002_A1753 0.44 0.36 0.24 0.67 0.81 hemB Delta-aminolevulinic acid dehydratase
SYNPCC7002_G0127 0.92 0.00 0.17 n.d. 0.14 hemB-II Delta-aminolevulinic acid dehydratase
SYNPCC7002_A1610 1.07 0.91 0.10 0.11 0.81 hemC Porphobilinogen deaminase
SYNPCC7002_A1192 0.36 1.56 2.34 1.50 0.36 cysG/hemD Uroporphyrin-III synthase/methyltransferase
SYNPCC7002_A0823 0.91 0.40 0.30 0.75 0.56 hemE Uroporphyrinogen decarboxylase
SYNPCC7002_A1828 0.40 0.66 0.09 0.13 1.17 hemF Coproporphyrinogen III oxidase, aerobic
SYNPCC7002_A1990 1.02 1.08 1.20 1.12 16.51 hemN2 O2-independent coproporphyrinogen III oxidase
SYNPCC7002_A2831 1.44 1.47 1.85 1.26 1.88 hemN O2-independent coproporphyrinogen III oxidase, putative
SYNPCC7002_A0644 0.56 1.67 0.37 0.22 0.69 hemJ Protoporphyrinogen oxidase
SYNPCC7002_A2476 0.43 1.05 0.23 0.22 0.92 chlP Geranylgeranyl reductase
SYNPCC7002_A0596 1.90 0.41 0.09 0.22 1.15 chlD Mg-protoporphyrin IX chelatase subunit D
SYNPCC7002_A2256 1.71 0.32 0.11 0.33 0.80 chlI Mg-chelatase ATPase subunit I
SYNPCC7002_A1000 1.04 1.45 3.65 2.52 0.61 chlH Mg-chelatase, subunit H
SYNPCC7002_A1018 0.68 0.78 0.52 0.67 1.01 chlH mG-protoporphyrin IX chelatase, subunit H
SYNPCC7002_A0908 1.92 0.49 0.46 0.95 0.91 chlM Magnesium-protoporphyrin O-methyltransferase
SYNPCC7002_A0707 0.82 0.58 0.08 0.14 1.19 acsF Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (oxygen-dependent)
SYNPCC7002_A1992 1.49 0.31 11.09 36.18 18.65 acsF2 Mg-protoporphyrin IX monomethyl ester cyclase
SYNPCC7002_A0210 0.41 0.34 0.10 0.31 0.91 por Light-dependent protochlorophyllide reductase
SYNPCC7002_A1652 0.08 3.88 5.79 1.49 0.75 chlB Light-independent protochlorophyllide reductase, B subunit
SYNPCC7002_A2345 0.16 4.76 0.78 0.16 1.40 chlN Light-independent protochlorophyllide reductase, N subunit
SYNPCC7002_A2347 0.15 8.20 0.41 0.05 0.90 chlL Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
SYNPCC7002_A0548 2.59 0.59 0.19 0.32 1.14 chlG Chlorophyll synthase, ChlG
SYNPCC7002_A2589 1.17 0.68 0.40 0.59 1.01 hemH Ferrochelatase
SYNPCC7002_A2508 0.53 0.31 0.05 0.16 0.63 hox1 Heme oxygenase (decyclizing)
SYNPCC7002_A1991 0.59 0.14 17.46 129.16 14.87 ho2 Heme oxygenase 2
SYNPCC7002_A2228 0.55 0.78 0.26 0.33 1.33 – Phycocyanobilin:ferredoxin oxidoreductase
ATP SYNTHASE
SYNPCC7002_A0734 3.01 0.21 0.29 1.40 0.75 atpA ATP synthase F1, alpha subunit
SYNPCC7002_A0739 1.60 0.07 0.02 0.23 1.65 atpB ATP synthase F0, A subunit
SYNPCC7002_A0750 2.80 0.28 0.06 0.23 0.60 atpC ATP synthase F1, epsilon subunit
SYNPCC7002_A0749 2.52 0.33 0.51 1.55 1.22 atpD ATP synthase beta chain
SYNPCC7002_A0738 4.47 0.23 0.21 0.90 0.71 atpE ATP synthase C chain (Lipid-binding protein)
SYNPCC7002_A0736 2.01 0.13 0.08 0.63 0.83 atpF ATP synthase B chain (Subunit I)
SYNPCC7002_A0733 2.18 0.23 0.23 1.00 0.79 atpG ATP synthase F1, gamma subunit
SYNPCC7002_A0737 1.45 0.13 0.09 0.73 1.07 atpG ATP synthase B chain (Subunit II)
SYNPCC7002_A0735 2.03 0.10 0.16 1.51 0.88 atpH ATP synthase F1, delta subunit
SYNPCC7002_A0740 1.65 0.14 0.04 0.31 0.62 atp1 ATP synthase subunit I
SYNPCC7002_G0151 0.21 1.58 0.33 0.21 1.34 atpA-II ATP synthase F1, alpha subunit
SYNPCC7002_G0148 0.15 1.26 0.55 0.44 0.98 atpB-II ATP synthase F0, A subunit
SYNPCC7002_G0145 0.43 3.39 0.35 0.10 1.28 atpC-II ATP synthase epsilon subunit
SYNPCC7002_G0144 0.31 1.88 0.88 0.47 0.98 atpD-II ATP synthase F1, beta subunit
SYNPCC7002_G0146 0.25 2.86 0.35 0.12 1.07 – F0F1-ATPase subunit, putative
SYNPCC7002_G0147 0.08 1.1 0.17 0.16 1.2 – Conserved hypothetical protein
SYNPCC7002_G0150 0.30 2.68 0.80 0.30 1.44 atpF-II ATP synthase b subunit
SYNPCC7002_G0152 0.11 0.98 0.16 0.17 1.51 atpG-II ATP synthase F1, gamma subunit
SYNPCC7002_G0149 0.34 2.64 0.93 0.35 0.79 atpH-II ATP synthase c subunit
NADH DEHYDROGENASE
SYNPCC7002_A0926 1.19 0.64 0.26 0.42 1.34 ndhA NADH dehydrogenase subunit A
SYNPCC7002_A2547 1.83 1.16 0.46 0.39 0.83 ndhB NADH dehydrogenase subunit B
SYNPCC7002_A2748 2.23 0.90 1.85 2.06 1.29 ndhC NADH dehydrogenase subunit C
SYNPCC7002_A2327 1.68 0.30 0.08 0.27 0.94 ndhD NADH dehydrogenase subunit 4
SYNPCC7002_A2000 0.22 1.16 0.63 0.54 1.04 ndhD1 NADH dehydrogenase subunit D1
SYNPCC7002_A1973 15.62 0.84 0.20 0.24 1.48 ndhD2 NADH dehydrogenase subunit D2
SYNPCC7002_A0923 1.16 0.61 0.07 0.11 1.04 ndhE NADH dehydrogenase subunit E
SYNPCC7002_A0854 1.61 0.85 0.83 0.97 1.05 ndhF NADH dehydrogenase subunit 5
SYNPCC7002_A0924 1.21 0.85 0.16 0.18 1.31 ndhG NADH dehydrogenase subunit G
SYNPCC7002_A2541 1.39 1.00 0.33 0.34 0.80 ndhH NADH dehydrogenase subunit H
SYNPCC7002_A0925 1.11 0.77 0.10 0.13 1.10 ndhI NADH-plastoquinone oxidoreductase, I subunit
SYNPCC7002_A2750 1.98 1.08 1.03 0.95 0.99 ndhJ NADH dehydrogenase subunit J
SYNPCC7002_A2749 1.89 0.85 1.86 2.18 1.07 ndhK NADH dehydrogenase subunit K
SYNPCC7002_A0560 2.22 0.78 0.63 0.81 1.30 ndhL NADH DH subunit L(inorganic carbon transporter)
SYNPCC7002_A0569 1.71 1.10 0.44 0.40 1.77 ndhM Conserved hypothetical protein
SYNPCC7002_A1143 1.17 1.49 1.02 0.69 0.80 ndhN Conserved hypothetical protein
SYNPCC7002_A2094 1.19 0.84 1.23 1.47 0.83 ndhO Conserved hypothetical protein
CYTOCHROME OXIDASE
SYNPCC7002_A1162 0.39 1.09 0.09 0.09 0.77 ctaCI Cytochrome oxidase subunit II
SYNPCC7002_A1163 0.50 1.57 0.34 0.22 1.06 ctaDI Cytochrome oxidase large subunit (subunit I)
SYNPCC7002_A1164 0.33 1.15 0.45 0.39 1.00 ctaEI Cytochrome oxidase small subunit (subunit III)
SYNPCC7002_A0727 0.62 0.45 0.11 0.24 1.12 ctaCII Cytochrome C oxidase subunit II
SYNPCC7002_A0726 1.13 0.86 0.20 0.23 0.96 ctaDII Cytochrome oxidase II large subunit
SYNPCC7002_A0725 1.09 0.81 0.29 0.35 1.26 ctaEII Cytochrome oxidase II small subunit
TRANSHYDROGENASE
SYNPCC7002_A0986 0.08 3.80 1.31 0.34 0.85 pntA Transhydrogenase, chain alpha, part 1
SYNPCC7002_A0984 0.13 6.80 0.60 0.09 0.83 pntB Transhydrogenase, subunit beta
SYNPCC7002_A0985 0.15 7.36 0.84 0.11 1.26 pntC Transhydrogenase, chain alpha, part 2
LACTATE DEHYDROGENASE, ALCOHOL DEHYDROGENASE AND HYDROGENASE
SYNPCC7002_G0164 0.48 0.24 0.14 0.61 0.63 ldhA Fermentative lactate dehydrogenase
SYNPCC7002_A1838 0.64 1.29 1.07 0.83 0.65 acsA Acetate-CoA ligase
SYNPCC7002_A2015 0.77 2.37 0.46 0.19 0.94 acs Acetyl-CoA synthetase
SYNPCC7002_A0868 0.59 1.10 0.41 0.38 0.90 – Alcohol DH, Zn-binding family
SYNPCC7002_A2590 0.88 0.60 0.11 0.19 0.72 – Short-chain alcohol dehydrogenase family
SYNPCC7002_A0195 0.30 6.62 16.39 2.47 1.24 hoxE Hydrogenase subunit E
SYNPCC7002_A0196 0.26 7.23 4.78 0.66 1.06 hoxF Hydrogenase large diaphorase subunit F
SYNPCC7002_A0197 0.33 4.88 2.15 0.44 0.76 hoxU Hydrogenase small diaphorase subunit U
SYNPCC7002_A0198 0.37 4.32 0.99 0.23 1.05 hoxY Hydrogenase small subunit Y
SYNPCC7002_A0200 0.31 3.11 0.40 0.13 0.53 hoxH Hydrogenase large subunit H
FATTY ACID DESATURASES
SYNPCC7002_A2756 2.92 0.14 0.05 0.39 1.82 desA Phosphatidylcholine desaturase
SYNPCC7002_A0159 9.49 0.00 0.05 n.d. 1.20 desB Omega-3 acyl-lipid desaturase
SYNPCC7002_A2198 0.81 0.25 0.07 0.28 1.02 desC Delta-9 acyl-lipid desaturase
SYNPCC7002_A2833 1.56 1.40 0.39 0.28 1.55 desE Fatty acid desaturase
SYNPCC7002_A1989 0.59 0.27 1.40 5.19 20.88 desF syn-2, delta 9 acyl-lipid fatty acid desaturase
IRON UPTAKE
SYNPCC7002_A2507 1.01 0.61 0.16 0.26 5.39 sufA Iron transport protein
SYNPCC7002_G0079 1.05 0.97 2.51 2.59 6.23 – ABC transporter, permease, FecCD family
SYNPCC7002_G0080 0.31 1.44 3.66 2.55 5.05 – Iron ABC transporter, ATP-binding protein
SYNPCC7002_G0081 0.36 0.33 0.93 2.83 5.01 – Outer membrane TonB-dependent receptor
SYNPCC7002_G0083 0.50 1.84 1.52 0.82 7.54 – ABC transporter, iron-binding lipoprotein
SYNPCC7002_G0086 1.13 0.50 0.41 0.82 3.32 – ATP-binding protein of ABC transporter for iron
SYNPCC7002_G0087 0.52 0.48 0.36 0.75 3.02 fecD Iron compound ABC transporter (FecCD)
SYNPCC7002_G0088 0.67 0.65 0.11 0.16 3.96 fecC FecCD transport (permease) family
SYNPCC7002_G0090 0.85 0.93 0.17 0.18 4.57 – TonB family C-terminal domain protein
SYNPCC7002_G0091 0.29 0.54 1.02 1.89 1.27 fecB Iron(III) dicitrate-binding periplasmic protein
SYNPCC7002_G0092 0.63 0.63 1.08 1.70 0.90 – Iron(III) dicitrate-binding periplasmic protein
SYNPCC7002_G0093 0.00 0.99 1.64 1.65 2.91 – TonB-dependent receptor
SYNPCC7002_G0095 0.97 0.45 0.42 0.94 2.36 – Ferric aerobactin receptor
SYNPCC7002_G0102 1.16 0.61 1.52 2.47 0.90 – Periplasmic binding protein; for iron siderophore
SYNPCC7002_G0138 1.13 0.55 0.15 0.27 11.93 – TonB-dependent siderophore receptor
SYNPCC7002_G0139 0.52 0.00 0.11 n.d. 7.82 – Periplasmic binding protein; iron transporter
OTHERS
SYNPCC7002_A0263 0.21 9.00 36.21 4.02 0.41 lrtA Light-repressed protein LrtA
SYNPCC7002_A1827 0.80 0.32 0.06 0.20 0.98 nirA Nitrite reductase
SYNPCC7002_A1314 1.12 0.17 0.13 0.77 0.98 narB Nitrate reductase
SYNPCC7002_A1292 0.22 0.41 0.19 0.47 13.60 isiA Photosystem I chlorophyll-binding protein
SYNPCC7002_A1291 1.37 0.00 0.30 n.d. 32.59 isiB Flavodoxin
SYNPCC7002_A1442 0.84 31.80 49.22 1.55 0.86 – Dihydroorotate dehydrogenase
SYNPCC7002_A2195 0.88 0.76 0.20 0.26 0.78 pyrD Dihydroorotate dehydrogenase
SYNPCC7002_A2286 2.29 0.33 0.12 0.36 1.01 pstA Phosphate ABC transporter, permease protein
SYNPCC7002_A1895 1.66 0.76 0.33 0.44 0.97 pstB Phosphate import ATP-binding protein
SYNPCC7002_A2285 2.17 0.66 0.25 0.37 0.75 pstC Phosphate ABC transporter, permease protein
SYNPCC7002_A2284 5.87 0.43 0.27 0.64 0.45 pstS Phosphate transporter; substrate-binding protein
SYNPCC7002_A1321 1.00 2.77 3.12 1.13 0.65 flv1 Flavoprotein
SYNPCC7002_A1743 0.62 1.79 0.70 0.39 0.68 flv2 Flavin reductase like domain protein
SYNPCC7002_A0147 3.07 0.37 0.46 1.25 0.65 groELII Chaperonin GroEL-II (Cpn 60)
SYNPCC7002_A2457 6.8 0.16 0.39 2.38 0.67 groES Chaperonin, 10 kDa protein
SYNPCC7002_A2458 4.07 0.12 0.23 1.86 0.67 groEL Chaperonin, 60 kDa protein

The ratio of relative transcript abundance under high light, dark oxic incubation, dark fermentative incubation, and low O2 conditions compared to “standard” conditions is given. The ratio for the dark anoxic sample is additionally compared to the dark oxic sample. Genes listed in more than one biochemical pathway are indicated by *, #, and $, respectively.

n.d., not defined (due to division by 0); std, standard conditions.

HHS Vulnerability Disclosure