Table 3.
Numbers of high confidence differences between Anaplasma strain genomes (gsMapper software). Total differences as well as non-polymorphic differences (found in all reads covering the respective regions, 100% frequency) are shown. Excluding homologous comparisons (FL, FL-relapse, St. Maries, Idaho), there are an average of 5302 differences between A. marginale strains and 23,984 between A. marginale strains and A. marginale subspecies centrale. Strain abbreviations are as specified in Table 2.
| Pyrosequencing data | vs. FL |
vs. StM-I |
vs. ACIS |
|||
|---|---|---|---|---|---|---|
| Total | @100% frequency | Total | @100% frequency | Total | @100% frequency | |
| FL | 105 | 38 | 7516 | 5233 | 29,044 | 24,014 |
| FL-relapse | 122 | 37 | 7698 | 5288 | 29,541 | 24,341 |
| FL-Okeechobee | 8747 | 5000 | 8552 | 5130 | 28,967 | 23,979 |
| WA-O | 9632 | 6240 | 9112 | 5847 | 30,388 | 23,889 |
| OK | 11,333 | 6635 | 11,662 | 6930 | 29,724 | 23,267 |
| VA | 4932 | 2368 | 8094 | 3884 | 28,696 | 23,229 |
| MS | 8064 | 5522 | 7505 | 5032 | 24,004 | 21,905 |
| Puerto Rico | 3217 | 2816 | 7164 | 6367 | 27,593 | 26,244 |
| SI | 9132 | 6487 | 8273 | 5781 | 27,955 | 23,719 |
| StM-I | 7747 | 5577 | 194 | 84 | 29,752 | 25,254 |