Table III. Enrichment analysis of Gene Ontogeny (GO) component predictions of serodiagnostic antigens. The 115 serodiagnostic IgG and IgM antigens (126 exon hits) identified in this study were analyzed for enrichment against full genome as described in the text. GO component predictions were obtained from ToxoDB.org. Significant fold enrichment, or underrepresentation for certain features, are underlined and bold.
GO Component Predictions | Proteins in Category | Exons on Chip | Serodiagnostic |
|||
---|---|---|---|---|---|---|
Exon Hits | Gene Hits | FoldEnrich | p value | |||
GO Cytoskeleton and organization | 28 | 4 | 0 | 0 | 0.0 | 1.000 |
GO Chromosome | 19 | 13 | 0 | 0 | 0.0 | 1.000 |
GO ER and Golgi network | 34 | 41 | 3 | 2 | 4.2 | 0.083 |
GO Intracellular | 272 | 49 | 3 | 3 | 0.8 | 1.000 |
GO Extracellular | 28 | 5 | 0 | 0 | 0.0 | 1.000 |
GO Mitochondria | 30 | 10 | 1 | 1 | 2.4 | 0.347 |
GO Membrane associated | 381 | 260 | 35 | 30 | 5.6 | 4.079E-15 |
GO Motor proteins | 18 | 18 | 0 | 0 | 0.0 | 1.000 |
GO Protease complex | 22 | 7 | 2 | 2 | 6.4 | 0.038 |
GO signal recognition complex | 8 | 6 | 0 | 0 | 0.0 | 1.000 |
GO Other Cytoplasm, nucleus or nuclear pore | 236 | 62 | 5 | 5 | 1.5 | 0.389 |
Other GO components | 78 | 16 | 0 | 0 | 0.0 | 0.630 |
GO component Null | 7001 | 876 | 77 | 72 | 0.7 | 3.876E-10 |
Total GO component | 8155 | 1367 | 126 | 115 |