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. Author manuscript; available in PMC: 2012 Nov 30.
Published in final edited form as: J Immunol Methods. 2010 Oct 31;374(1-2):26–34. doi: 10.1016/j.jim.2010.10.011

Figure 2.

Figure 2

Input encoding. For nonamer peptide inputs the input layer consist of 189 input units where the 180 first correspond to the peptide in sparse- or BLOSUM50 encoding, respectively. The last 9 units are taken from the PSSM generated using SYFPEITHI peptides. The input units are colorcoded according to the corresponding position in the input peptide.