. Author manuscript; available in PMC: 2012 Jul 13.

Published in final edited form as: Structure. 2011 Jul 13;19(7):955–966. doi: 10.1016/j.str.2011.04.006

Table 2.

Template identification by different methods on 500 testing proteins.

Methods	TM-score (first/best in top 5)	RMSD (coverage)¹	N_Hit¹	I-RMSD/I-cov¹
PSI-BLAST	0.269/0.293	8.19 Å (63.3%)	124	13.7 Å (42.9%)
C-PPA	0.321/0.334	5.43 Å (64.8%)	145	13.1 Å (49.3%)
C-MUSTER	0.381/0.412	4.51 Å (69.8%)	161	12.8 Å (54.6%)
COTH threading	0.394/0.421	4.45 Å (71.0%)	168	12.6 Å (55.8%)
COTH	0.438/0.477	4.30 Å (77.6 %)	186	12.9 Å (61.1%)

Data are shown as the best in top 5 models.