. Author manuscript; available in PMC: 2012 Jul 13.

Published in final edited form as: Structure. 2011 Jul 13;19(7):955–966. doi: 10.1016/j.str.2011.04.006

Table 3.

Summary of the best in top 10 models on 77 ZDOCK benchmark proteins.

Methods	Interface-Accuracy (Coverage)¹	Contacts-Accuracy (Coverage)²	N_Hit³	Median I- RMSD
COTH	59.8% (31.7%)	34.2% (33.4%)	28	6.37 Å
COTH-exp	70.2% (39.8%)	47.4% (42.3%)	23	7.76 Å
COTH-model	63.6% (38.7%)	40.5% (40.3%)	21	7.92 Å
ZDOCK-exp	67.7% (64.5%)	46.6% (48.8%)	26	8.29 Å
ZDOCK-model	56.4% (49.7%)	30.1% (40.4%)	20	9.78 Å

Accuracy (coverage) of the predicted interface residues.

Accuracy (coverage) of the predicted inter-chain contacts.

Number of hits which have an I-RMSD ≤ 5Å to the native.