Table 1.
Gene symbol | Gene descriptiona | Fold change in MCF-sh-CCN5 expression relative to MCF7-sh-scrambled |
---|---|---|
Mesenchymal markers | ||
CD44 | CD44 molecule | +14.7 |
IGFBP7 | Insulin-like growth factor binding protein 7 | +8.5 |
ITGA5 | Integrin α5 | +5.1 |
LAMB3 | Laminin beta 3 | +37 |
LAMC2 | Laminin gamma 2 | +19.6 |
PROCR | Protein C receptor, endothelial | +8.2 |
SNAI2/SLUG | Snail homolog 2 | +72.2 |
VIM | Vimentin | +188.3 |
ZEB1 | Zinc finger E-box binding homeobox 1 | +6.6 |
Epithelial markers | ||
CD24 | CD24 molecule | −20.4 |
CDH1 | E-cadherin | −110.2 |
CLDN1 | Claudin 1 | −2 |
DSP | Desmoplakin | −3 |
ERBB2 | v-erb-b2 erythroblastic leukemia viral oncogene homolog 2 | −4 |
ESR1 | Estrogen receptor 1 | −148 |
FOXA1 | Forkhead box A1 | −65 |
GATA3 | GATA binding protein 3 | −32 |
JUP | Junction plakoglobin | −25 |
KRT8 | Keratin 8 | −11 |
KRT18 | Keratin 18 | −6 |
MUC1 | Mucin 1, cell surface associated | −5 |
TFF1 | Trefoil factor 1 | −427 |
TFF3 | Trefoil factor 3 | −2 |
XBP1 | X-box binding protein 1 | −12 |
TGF-β pathway markers | ||
CTGF | Connective tissue growth factor | +12.1 |
FN1 | Fibronectin 1 | +8.9 |
JUN | v-jun sarcoma virus 17 oncogene homolog | +2.6 |
SERPINE1 | Serpin peptidase inhibitor member 1 | +116.3 |
SMAD1 | SMAD, mothers against DPP homolog 1 | −5.7 |
SMAD3 | SMAD, mothers against DPP homolog 3 | +2.1 |
SMAD6 | SMAD, mothers against DPP homolog 6 | −27.9 |
SPARC | Secreted protein acidic cysteine rich | +2 |
TGFBR1 | TGF-β receptor 1 | +3.2 |
TGFBR2 | TGF-β receptor 2 | +416.5 |
TGFBR3 | TGF-β receptor 3 | +44.6 |
TGFB1 | TGF-β 1 | +2.6 |
TGFB3 | TGF-β 3 | −37.6 |
DPP, decapentaplegic homologs.