Table 1.
HCNEs
Region | Human/chicken alignment |
Transcriptional activitya | Corresponding region in: |
No. of embryos showing Lacz expression/total no. examined | ||
---|---|---|---|---|---|---|
Length (bp) | % identity | Alvarez-Medina et al. (3) | Abassi et al. (2) | |||
1 | 229 | 61 | Strong; DV gradient | 40/53 | ||
2 | 132 | 83.3 | Strong; DV gradient | 10/10 | ||
3 | 406 | 68.5 | Negative | 5/6 | ||
4 | 455 | 79.8 | Strong; continuous | HCNR1; weak expression in neural tube | 17/23 | |
5 | 720 | 87.4 | Moderate; DV gradient | HCNR1; weak expression in neural tube | CNE12; not tested in vivo | 9/14 |
6 | 244 | 61.5 | Strong; DV gradient | HCNR1; weak expression in neural tube | 12/20 | |
7 | 542 | 79.9 | Moderate; AP gradient | HCNR1; weak expression in neural tube | 3/9 | |
8 | 214 | 64.5 | Moderate; DV gradient | 6/8 | ||
9 | 226 | 61.9 | Strong; DV gradient | 13/34 | ||
10 | 203 | 80.3 | Negative | 1/6 | ||
11 | 111 | 62.2 | No activity | 11/12 | ||
12 | 355 | 69 | No activity | 5/8 | ||
13 | 483 | 89.6 | Strong; DV gradient | HCNR2; strong expression in neural tube | CNE1; anterior CNS in zebrafish | 6/9 |
14 | 487 | 90.1 | Strong; DV gradient | HCNR2; strong expression in neural tube | CNE1; anterior CNS in zebrafish | 6/9 |
15 | 229 | 76.9 | Moderate; DV gradient | HCNR2; strong expression in neural tube | 10/13 | |
16 | 271 | 67.5 | Weak; posterior | 4/5 | ||
17 | 98 | 78.6 | Weak; dorsal | 5/7 | ||
18 | 1,090 | 93.1 | Strong; excluded from floor plate | HCNR3; moderate expression in neural tube | CNE2; anterior CNS in zebrafish and mouse | 11/11 |
19 | 433 | 71.1 | Weak | 3/7 |
AP, anteroposterior; DV, dorsoventral.