Table 2.

A list of MRI image analysis tools that can be used for data conversion, preparion and tissue segmentation.

Image Processing Package	Purpose	Web Location
AFNI	Analysis of Functional NeuroImages	http://afni.nimh.nih.gov/afni/doc/misc/
BrainSuite BrainParser	Volume Segmentation And Parcellation	http://www.loni.ucla.edu/Software/BrainSuite http://www.loni.ucla.edu/Software/BrainParser
Brain Visa	Q-ball T1w-segement DTI-tracking	http://brainvisa.info/ http://www.nitrc.org/projects/brainvisa/
CRUISE	Volume Segmentation	http://www.nitrc.org/projects/toads-cruise/
JIST	Java Image Science Toolkit. Handles multi tensors	http://www.nitrc.org/projects/jist/
ICBM	Brain Atlases and software	http://www.loni.ucla.edu/ICBM/Resources/Resources_Software.shtml
ImageJ	Image Processing and Analysis in Java	http://rsb.info.nih.gov/ij/
FreeSurfer	Surface and volume parcellaltion	http://surfer.nmr.mgh.harvard.edu/
FSL BET FIRST-FAST	Brain Masking Segmentation	http://www.fmrib.ox.ac.uk/fslcourse/ http://www.fmrib.ox.ac.uk/fsl/bet2/index.html http://www.fmrib.ox.ac.uk/fsl/first/
MEDInria	Image Processing	http://www-sop.inria.fr/asclepios/software/MedINRIA/
MRIcro MRIcron Includes BET	Tools for preprocessing, visualizing and converting data types *.nii, analyze, dicom	http://www.mricro.com http://www.sph.sc.edu/comd/rorden/anatomy/index.htm
MIPAV	Medical Image Processing, Analysis, and Visualization	http://mipav.cit.nih.gov/
Slicer	Open source package for visualization and medical image computation	http://www.slicer.org/
SPM	fMRI, smoothing/VBM	http://www.fil.ion.ucl.ac.uk/spm/ http://www.fil.ion.ucl.ac.uk/spm/ext/#toolboxes