AFNI |
Analysis of Functional NeuroImages |
http://afni.nimh.nih.gov/afni/doc/misc/ |
BrainSuite BrainParser
|
Volume Segmentation And Parcellation |
http://www.loni.ucla.edu/Software/BrainSuite http://www.loni.ucla.edu/Software/BrainParser
|
Brain Visa |
Q-ball T1w-segement DTI-tracking |
http://brainvisa.info/ http://www.nitrc.org/projects/brainvisa/
|
CRUISE |
Volume Segmentation |
http://www.nitrc.org/projects/toads-cruise/ |
JIST |
Java Image Science Toolkit. Handles multi tensors |
http://www.nitrc.org/projects/jist/ |
ICBM |
Brain Atlases and software |
http://www.loni.ucla.edu/ICBM/Resources/Resources_Software.shtml |
ImageJ |
Image Processing and Analysis in Java |
http://rsb.info.nih.gov/ij/ |
FreeSurfer |
Surface and volume parcellaltion |
http://surfer.nmr.mgh.harvard.edu/ |
FSL BET FIRST-FAST
|
Brain Masking Segmentation |
http://www.fmrib.ox.ac.uk/fslcourse/ http://www.fmrib.ox.ac.uk/fsl/bet2/index.html http://www.fmrib.ox.ac.uk/fsl/first/
|
MEDInria |
Image Processing |
http://www-sop.inria.fr/asclepios/software/MedINRIA/ |
MRIcro MRIcron Includes BET |
Tools for preprocessing, visualizing and converting data types *.nii, analyze, dicom |
http://www.mricro.com http://www.sph.sc.edu/comd/rorden/anatomy/index.htm
|
MIPAV |
Medical Image Processing, Analysis, and Visualization |
http://mipav.cit.nih.gov/ |
Slicer |
Open source package for visualization and medical image computation |
http://www.slicer.org/ |
SPM |
fMRI, smoothing/VBM |
http://www.fil.ion.ucl.ac.uk/spm/ http://www.fil.ion.ucl.ac.uk/spm/ext/#toolboxes
|