Table 5.
Haplotype Analysis in Affected Males from Family 1: FineMapChX_STR Results
| Sample | Allele | Markera | hg18 Position | Chromosome |
|---|---|---|---|---|
| III-4 | 219 | DXS1275 (AFM261ZH5) | 68,431,124 | Xq13.1 |
| III-6 | 225 | |||
| II-6 (FFPE tissue) | ? | |||
| III-7 (FFPE tissue) | 225 | |||
| III-4 | 253 | DXS8037 (AFMA285XG5) | 74,040,314 | Xq13.3 |
| III-6 | 257 | |||
| II-6 (FFPE tissue) | 242 | |||
| III-7 (FFPE tissue) | 257 | |||
| III-4 | 162 | DXS986 (AFM116XG1) | 79,267,784 | Xq21.1 |
| III-6 | 164 | |||
| II-6 (FFPE tissue) | 168 | |||
| III-7 (FFPE tissue) | 164 | |||
| III-4 | 106 | DXS8076 (AFMB357XE5) | 82,666,040 | Xq21.1 |
| III-6 | 98 | |||
| II-6 (FFPE tissue) | 98 | |||
| III-7 (FFPE tissue) | 98 | |||
| III-4 | 217 | DXS1203 (AFM262VG1) | 92,654,766 | Xq21.32 |
| III-6 | 217 | |||
| II-6 (FFPE tissue) | 217 | |||
| III-7 (FFPE tissue) | 217 | |||
| III-4 | 131 | DXS990 (AFM136YC7) | 92,887,320 | Xq21.32 |
| III-6 | 127 | |||
| II-6 (FFPE tissue) | 127 | |||
| III-7 (FFPE tissue) | 127 | |||
| III-4 | 253 | DXS6799 (GATA29G07) | 97,265,664 | Xq21.33 |
| III-6 | 257 | |||
| II-6 (FFPE tissue) | 257 | |||
| III-7 (FFPE tissue) | 257 | |||
| III-4 | 201 | DXS8020 (AFMA162TC1) | 99,455,440 | Xq22.1 |
| III-6 | 212 | |||
| II-6 (FFPE tissue) | 203 | |||
| III-7 (FFPE tissue) | 212 | |||
| III-4 | 128 | DXS1106 (AFM263WE1) | 102,618,641 | Xq22.2 |
| III-6 | 130 | |||
| II-6 (FFPE tissue) | 126 | |||
| III-7 (FFPE tissue) | 130 | |||
| III-4 | 317 | DXS8055 (AFMB291YE5) | 114,561,258 | Xq23 |
| III-6 | 315 | |||
| II-6 (FFPE tissue) | 317 | |||
| III-7 (FFPE tissue) | 315 | |||
| III-4 | 206 | DXS1001 (AFM248WE5) | 119,720,593 | Xq24 |
| III-6 | 199 | |||
| II-6 (FFPE tissue) | 206 | |||
| III-7 (FFPE tissue) | 199 | |||
| III-4 | 165 | DXS1047 (AFM150XF10) | 128,902,983 | Xq25 |
| III-6 | 165 | |||
| II-6 (FFPE tissue) | 165 | |||
| III-7 (FFPE tissue) | 160 | |||
| III-4 | 90 | DXS1227 (AFM317YE9) | 140,630,173 | Xq27.2 |
| III-6 | 82 | |||
| II-6 (FFPE tissue) | 90 | |||
| III-7 (FFPE tissue) | 82 | |||
| III-4 | 170 | DXS8043 (AFMB018WD9) | 143,836,276 | Xq27.3 |
| III-6 | 156 | |||
| II-6 (FFPE tissue) | 170 | |||
| III-7 (FFPE tissue) | 170 | |||
| III-4 | 83 | DXS8091 (AFM345WG9) | 147,410,588 | Xq28 |
| III-6 | 83 | |||
| II-6 (FFPE tissue) | 83 | |||
| III-7 (FFPE tissue) | 83 | |||
| c.109T>C in NAA10 | ∼152,850,921b | Xq28 | ||
| III-4 | 310 | DXS1073 (AFM276XH9) | 153,482,054 | Xq28 |
| III-6 | 310 | |||
| II-6 (FFPE tissue) | 310 | |||
| III-7 (FFPE tissue) | 310 |
a
Genomic position represents a single nucleotide within the STR.
b
Maximum Shared Region (hg18): chrX:143,836,276–154,913,754 (telomere) (11 Mb).