Skip to main content
. 2011 Jul 15;89(1):168–175. doi: 10.1016/j.ajhg.2011.06.008

Table 2.

Exome Sequencing: Rare, Heterozygous, Nonsynonymous Variations Shared by Two Individuals of Pedigree A

Gene Position (hg19) dbSNP Transcript Variations
Control Genotypes
Segregation
Nucleotide Amino Acid 1/1 1/2 2/2
PLK3 chr1:45270359 NM_004073.2 c.1543T>A p.Ser515Thr 669 0 0 4 of 7
C8A chr1:57383357 rs41285938 NM_000562.2 c.1723C>T p.Pro575Ser 5 of 7
ADCY10 chr1:167787479 rs41270737 NM_018417.4 c.4313A>G p.Asn1438Ser 2 of 7
LAMB2 chr3:49166460 NM_002292.3 c.1724G>A p.Arg575Gln 647 28 0 5 of 7
NOM1 chr7:156762317 NM_138400.1 c.2503G>A p.Ala835Thr 670 0 0 3 of 7
KIF22 chr16:29816237 NM_007317.1 c.1780G>A p.Asp594Asn 665 6 0 6 of 7
SEZ6L2 chr16:29899021 NM_012410.2 c.947G>A p.Arg316His 660 4 0 7 of 7
VPS35 chr16:46696364 NM_018206.4 c. 1858G>A p.Asp620Asn 1069a 0 0 7 of 7
NLRP1 chr17:5421150 NM_001033053.2 c.3985G>A p.Val1329Ile 666 4 0 3 of 7
NEURL4 chr17:7221197 NM_001005408.1 c.4109G>A p.Arg1370Gln 3 of 7

Rare variations revealed by exome sequencing were checked in 670 controls (KORA S4) by MALDI-TOF analysis. The variant allele was denoted as “2,” the reference allele as “1.”

a

This number includes additional 554 Austrian control individuals investigated by a TaqMan genotyping assay. Segregation shows the number of affected pedigree A individuals who carry the variant allele.