Table 2.
Exome Sequencing: Rare, Heterozygous, Nonsynonymous Variations Shared by Two Individuals of Pedigree A
Gene | Position (hg19) | dbSNP | Transcript |
Variations |
Control Genotypes |
Segregation | |||
---|---|---|---|---|---|---|---|---|---|
Nucleotide | Amino Acid | 1/1 | 1/2 | 2/2 | |||||
PLK3 | chr1:45270359 | NM_004073.2 | c.1543T>A | p.Ser515Thr | 669 | 0 | 0 | 4 of 7 | |
C8A | chr1:57383357 | rs41285938 | NM_000562.2 | c.1723C>T | p.Pro575Ser | 5 of 7 | |||
ADCY10 | chr1:167787479 | rs41270737 | NM_018417.4 | c.4313A>G | p.Asn1438Ser | 2 of 7 | |||
LAMB2 | chr3:49166460 | NM_002292.3 | c.1724G>A | p.Arg575Gln | 647 | 28 | 0 | 5 of 7 | |
NOM1 | chr7:156762317 | NM_138400.1 | c.2503G>A | p.Ala835Thr | 670 | 0 | 0 | 3 of 7 | |
KIF22 | chr16:29816237 | NM_007317.1 | c.1780G>A | p.Asp594Asn | 665 | 6 | 0 | 6 of 7 | |
SEZ6L2 | chr16:29899021 | NM_012410.2 | c.947G>A | p.Arg316His | 660 | 4 | 0 | 7 of 7 | |
VPS35 | chr16:46696364 | NM_018206.4 | c. 1858G>A | p.Asp620Asn | 1069a | 0 | 0 | 7 of 7 | |
NLRP1 | chr17:5421150 | NM_001033053.2 | c.3985G>A | p.Val1329Ile | 666 | 4 | 0 | 3 of 7 | |
NEURL4 | chr17:7221197 | NM_001005408.1 | c.4109G>A | p.Arg1370Gln | 3 of 7 |
Rare variations revealed by exome sequencing were checked in 670 controls (KORA S4) by MALDI-TOF analysis. The variant allele was denoted as “2,” the reference allele as “1.”
This number includes additional 554 Austrian control individuals investigated by a TaqMan genotyping assay. Segregation shows the number of affected pedigree A individuals who carry the variant allele.