Table II. Twelve genes that are significantly expressed in oul1, and their candidate L1 box-binding motif in the promoter region.

Italics indicated down-regulated genes in oul1 mutants; the others were up-regulated. RAP, Rice Annotation Project; TIGR, The Institute for Genomic Research; wt, wild type.

RAP or TIGR Locus Identifier	Intensity Value						Fold Change (oul1/Wild Type)	P	Putative Roc5 Binding Site in the Promoter Region	Binding Motif	Description
	oul1-1	oul1-2	oul1-3	wt1	wt2	wt3
LOC_Os10g30670	234.9	217.7	183.1	10.22	7.37	9.65	23.3	5E-08	−910 to −903 bp	AACATTTA	Putative transposon protein
LOC_Os01g35330	901	804.1	736.9	91.88	116.8	94.96	8.04	7E-08	−976 to −969 bp	TAAATGTT	Unknown protein
LOC_Os03g19600	56.4	70.55	69.86	9.01	11.36	7.69	7.01	6E-06	−687 to −680 bp and −413 to −406 bp	TGCATTTA TAAATGCA	Unknown protein
Os01g0591000	481	466.2	454.5	68.86	64.15	68.59	6.95	7E-07	−754 to −747 bp and −469 to −462 bp	TAAATGTT	Cytosolic aldehyde dehydrogenase
Osllg0592100	547	670	536.4	85.12	87.7	80.52	6.92	5E-07	−879 to −872 bp	TAAATGTT	Cell wall macromolecule catabolic process
Os10g0504900	951	730.9	328.2	55.44	195.6	52.94	6.61	0.0004	−561 to −554 bp	AACATTTA	Nonspecific lipid-transfer protein 2
Os07g0241600	123	159.4	130.5	25.08	33.03	25.83	4.92	2E-05	−973 to −966 bp	AACATTTA	Transferring hexosyl groups
Os05g0161500	3,474	3,168	2,435	784.41	550.2	917.1	4.03	1E-05	−894 to −887 bp	TAAATGCA	Putative uncharacterized protein
Os05g0225800	136	121	88.12	23.03	42.68	32.41	3.52	9E-06	−833 to −826 bp	AACATTTA	Putative uncharacterized protein
Os11g0226800	10.1	17.42	14.57	90.85	85.22	80.22	0.16	1E-06	−653 to−646 bp	TAAATGCA	NBS-LRR-like protein (YR5)
Os06g0553200	9.01	11.36	7.69	56.4	70.55	69.86	0.14	7E-07	−494 to−487 bp and −1,906 to−1,898 bp	AACATTTA	Protodermal factor-like protein
Os08g0473900	64.4	44.9	26.21	477.5	444.4	421.7	0.1	8E-06	−803 to−796 bp	TAAATGCT	α-Amylase isozyme 3D