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The location of FPpred. in coding and noncoding regions of primary transcripts as a percentage of the total FPpred. is shown.
| Region | Arabidopsis | Rice |
| 5′ UTR | 7.3% | 6.6% |
| 3′ UTR | 14.3% | 9.1% |
| Introns | 71.7% | 78.4% |
| First introna | 20.4% | 21% |
| CDS | 6.7% | 5.9% |
The nearest intron from the TSS that has length greater than 50 nucleotides is considered as the first intron irrespective of its location in the UTR or the coding region.
