Table I. Characteristics of the rice and maize networks.

Characteristic	Rice Network	Maize Network
Array	Affymetrix Rice GeneChip	Affymetrix Maize Gene Chip
NCBI GEO accession for array	GPL2025	GPL4032
Probe sets on array	54,168	17,555
Genomic loci mapped to probe sets	46,499	14,792
Microarray samplesa	508	253
WGCNA selected power threshold	4	6
WGCNA module dendrogram cutoff	0.20	0.20
RMT hard threshold	0.7101	0.5781
Probe sets in network	4,528	2,708
Edges in probe set network	43,144	31,983
Loci in network	2,257	2,071
Edges in loci network	32,820	33,397
Modules	45	34
Enriched terms	2,373	1,928
Functional clusters	76	35
Clustered terms	960	596
Enriched phenotypic terms	17	N/Ab

^aNumber of samples remaining after outlier detection and removal.

^bN/A, Not applicable.