Table V. The 30 most highly up- or down-regulated onion probes compared with controls after treatment with EB, MB, or EMB.

Treatments are defined in “Materials and Methods.”

Probe	Tentative Annotation	Fold Changea	Regulation	Onion Sequence Identifier	Treatment
CUST_792_PI403527117	Integral membrane protein	51.1	Up	TC4630	EB
CUST_2054_PI403527117	3-Hydroxy-3-methylglutaryl-coenzyme A reductase	48.1	Up	TC5892	EMB
CUST_390_PI403527117	Transferase family protein	42.0	Up	TC4228	MB
CUST_5592_PI403527117	WD domain, G-β repeat domain-containing protein	33.9	Up	CF447771	MB
CUST_3008_PI403527117	Retrotransposon protein	28.9	Up	TC6846	MB
CUST_2287_PI403527117	LTPL121; protease inhibitor/seed storage/LTP family protein precursor	26.4	Down	TC6125	EB
CUST_10068_PI403527117	1-Aminocyclopropane-1-carboxylate oxidase homolog 4	24.7	Up	CF438875	EMB
CUST_7201_PI403527117	Starch synthase	23.8	Down	CF437167	EMB
CUST_160_PI403527117	Per1-like family protein	22.6	Up	TC3998	EMB
CUST_3247_PI403527117	CHIT5; chitinase family protein precursor	21.8	Up	TC7085	EMB
CUST_4826_PI403527117	Protein kinase family protein	21.0	Up	CF438357	MB
CUST_7052_PI403527117	S-Formylglutathione hydrolase	18.4	Up	CF448815	MB
CUST_160_PI403527117	Per1-like family protein	18.2	Up	TC3998	EB
CUST_11478_PI403527117	Stress-responsive protein	18.1	Up	BI095628	EMB
CUST_10708_PI403527117	Amino acid transporter	17.9	Up	CF440190	EB
CUST_10973_PI403527117	Monocopper oxidase	17.7	Down	BE205651	EB
CUST_1451_PI403527117	Dihydrodipicolinate synthase, chloroplast precursor	17.1	Up	TC5289	MB
CUST_36_PI403527117	Peroxidase precursor	16.6	Up	TC3874	MB
CUST_10095_PI403527117	Ser/Thr protein phosphatase family protein	16.3	Up	CF440115	MB
CUST_600_PI403527117	EF hand family protein	15.9	Up	TC4438	EMB
CUST_6021_PI403527117	OsWRKY48; superfamily of transcription factors with WRKY and zinc finger domains	15.3	Down	CF439568	EMB
CUST_6801_PI403527117	Zinc finger family protein	15.3	Down	CF435756	EB
CUST_9681_PI403527117	α-Soluble NSF attachment protein	15.1	Up	BQ580069	EMB
CUST_792_PI403527117	Integral membrane protein DUF6-containing protein	15.0	Up	TC4630	EMB
CUST_11354_PI403527117	Mitochondrial carrier protein	14.8	Up	CF441173	MB
CUST_2054_PI403527117	3-Hydroxy-3-methylglutaryl-coenzyme A reductase	14.5	Up	TC5892	EB
CUST_160_PI403527117	Per1-like family protein	14.4	Up	TC3998	MB
CUST_10095_PI403527117	Ser/Thr protein phosphatase family protein	12.7	Up	CF440115	EB
CUST_4897_PI403527117	Aldehyde dehydrogenase	12.6	Up	CF442148	EB
CUST_10269_PI403527117	Myristoyl-acyl carrier protein thioesterase, chloroplast precursor	12.6	Up	CF445478	EB

^aFold change compared with expression of control, calculated as 2x, where x = absolute value of (normalized treatment/normalized control).