Table 1.
Summary of the output of the IBDgraph software at single marker locations, for three outputs of the gl_auto program
| Pedigree | Individuals with marker | Individuals in ibd graph | FGL graphs | Equivalence classes | Mean size over FGL | Median size over FGL |
|---|---|---|---|---|---|---|
| Ped26-ChrA | 22 | 26 | 1,666 | 24 | 208.3 | 218 |
| Ped26-ChrB | 18 | 26 | 1,666 | 277 | 11.2 | 12 |
| Ped26-ChrB | 18 | 20 | 1,666 | 14 | 648.7 | 730 |
| Ped47 | 27 | 47 | 1,000 | 829 | 1.5 | 1 |
| Ped47-obs | 27 | 27 | 1,000 | 370 | 8.0 | 5 |
| Ped31 | 19 | 31 | 1,000 | 386 | 6.1 | 4 |
| Ped31-obs | 19 | 19 | 1,000 | 162 | 21.1 | 13 |
| Pedl4 | 8 | 14 | 1,000 | 16 | 362.0 | 413 |
| Pedl4-obs | 8 | 8 | 1,000 | 10 | 759.4 | 865 |
Two sets of 1,666 realizations were obtained from running gl_auto on Ped26 on two chromosomes here denoted ChrA and ChrB. A single set of 1,000 realizations was obtained from running gl_auto on Ped47. Ped31 and Pedl4 are two subsets of Ped47.