Table 1. Draft genome sequencing summary for 14 phylogenetically divergent P. syringae strains.
Identifier | Pgy R4 | Pmo | Pta | Pae | Pla 107 | Cit7 | Pac | Ppi R6 | Pja | Ptt | Pma | Pla 106 | Pmp | Pan |
Pathovar | glycinea | mori | tabaci | aesculi | lachrymans | NA | aceris | pisi | japonica | aptata | maculicola | lachrymans | morsprunorum | actinidiae |
Strain | A29-2 | MAFF 301020 | ATCC11528 | 0893_23 | MAFF | |||||||||
301315 | Cit7 | MAFF 302273PT | 1704B | MAFF 301072 PT | DSM50252 | ES4326 | MAFF 302278PT | MAFF 302280PT | MAFF302091 | |||||
Illumina Reads | 4,251,697 | 7,592,243 | 5,030,953 | 15,848,526 | 8,360,650 | 5,319,177 | 6,897,439 | 4,637,560 | 5,122,223 | 5,446,792 | 14,975,328 | 8,177,882 | 16,637,970 | 10,336,469 |
Illumina Bases | 153,061,092 | 265,728,505 | 181,114,308 | 554,698,410 | 641,057,438 | 191,490,372 | 241,410,365 | 166,952,160 | 184,400,028 | 196,084,512 | 524,136,480 | 294,403,752 | 1,247,847,750 | 361,776,415 |
454 Reads | 432,292 | 162,625 | 131,130 | 130,109 | 126,287 | 149,557 | 155,239 | 285,725 | 375,650 | 144,250 | 300,835 | 345,257 | 141,417 | 299,744 |
454 Bases | 30,418,492 | 24,154,020 | 19,726,747 | 19,173,310 | 20,116,024 | 22,337,212 | 22,063,131 | 22,457,735 | 24,292,249 | 21,590,755 | 23,408,095 | 26,294,110 | 21,665,692 | 22,364,744 |
454 Paired Ends | 116,271 | 51,096 | 39,842 | 41,071 | 33,455 | 46,380 | 51,113 | 104,112 | 108,436 | 44,421 | 110,879 | 84,301 | 42,284 | 112,016 |
# Contigs | 4,430 | 3,414 | 1,613 | 915 | 791 | 2,655 | 1,179 | 5,099 | 4,661 | 3,776 | 878 | 798 | 969 | 941 |
Contigs N50 | 3,723 | 5,634 | 16,098 | 16,806 | 22,550 | 6,862 | 12,409 | 3,003 | 4,021 | 4,753 | 17,222 | 15,738 | 15,161 | 14,086 |
# Scaffolds | 109 | 70 | 32 | 139 | 222 | 57 | 60 | 170 | 60 | 53 | 44 | 90 | 69 | 138 |
Scaffolds N50 | 111,252 | 203,999 | 344,662 | 81,010 | 129,539 | 399,070 | 176,541 | 83,352 | 181,972 | 165,542 | 340,783 | 135,618 | 175,394 | 69,188 |
NCBI Accession # <$>\raster="rg1"<$> | ADWY | AEAG | AEAP | AEAD | AEAF* | AEAJ | AEAO | AEAI | AEAH | AEAN | AEAK | AEAM | AEAE | AEAL |
Included in TTE Screen | Yes | Yes | No | No | Yes | No | Yes | Yes | No | Yes | Pma M4 | Yes | Yes | Yes |
<$>\raster="rg1"<$>All accession numbers are followed by 00000000.
*Accession # for the Pla 107 Mega Plasmid Sequence is CM000959.