Skip to main content
. 2011 Jul 14;7(7):e1002132. doi: 10.1371/journal.ppat.1002132

Table 1. Draft genome sequencing summary for 14 phylogenetically divergent P. syringae strains.

Identifier Pgy R4 Pmo Pta Pae Pla 107 Cit7 Pac Ppi R6 Pja Ptt Pma Pla 106 Pmp Pan
Pathovar glycinea mori tabaci aesculi lachrymans NA aceris pisi japonica aptata maculicola lachrymans morsprunorum actinidiae
Strain A29-2 MAFF 301020 ATCC11528 0893_23 MAFF
301315 Cit7 MAFF 302273PT 1704B MAFF 301072 PT DSM50252 ES4326 MAFF 302278PT MAFF 302280PT MAFF302091
Illumina Reads 4,251,697 7,592,243 5,030,953 15,848,526 8,360,650 5,319,177 6,897,439 4,637,560 5,122,223 5,446,792 14,975,328 8,177,882 16,637,970 10,336,469
Illumina Bases 153,061,092 265,728,505 181,114,308 554,698,410 641,057,438 191,490,372 241,410,365 166,952,160 184,400,028 196,084,512 524,136,480 294,403,752 1,247,847,750 361,776,415
454 Reads 432,292 162,625 131,130 130,109 126,287 149,557 155,239 285,725 375,650 144,250 300,835 345,257 141,417 299,744
454 Bases 30,418,492 24,154,020 19,726,747 19,173,310 20,116,024 22,337,212 22,063,131 22,457,735 24,292,249 21,590,755 23,408,095 26,294,110 21,665,692 22,364,744
454 Paired Ends 116,271 51,096 39,842 41,071 33,455 46,380 51,113 104,112 108,436 44,421 110,879 84,301 42,284 112,016
# Contigs 4,430 3,414 1,613 915 791 2,655 1,179 5,099 4,661 3,776 878 798 969 941
Contigs N50 3,723 5,634 16,098 16,806 22,550 6,862 12,409 3,003 4,021 4,753 17,222 15,738 15,161 14,086
# Scaffolds 109 70 32 139 222 57 60 170 60 53 44 90 69 138
Scaffolds N50 111,252 203,999 344,662 81,010 129,539 399,070 176,541 83,352 181,972 165,542 340,783 135,618 175,394 69,188
NCBI Accession # <$>\raster="rg1"<$> ADWY AEAG AEAP AEAD AEAF* AEAJ AEAO AEAI AEAH AEAN AEAK AEAM AEAE AEAL
Included in TTE Screen Yes Yes No No Yes No Yes Yes No Yes Pma M4 Yes Yes Yes

<$>\raster="rg1"<$>All accession numbers are followed by 00000000.

*Accession # for the Pla 107 Mega Plasmid Sequence is CM000959.