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. 2011 Jul 14;7(7):e1002132. doi: 10.1371/journal.ppat.1002132

Table 2. Novel type three effectors.

hop name Genbank accession source strain hrp box BLASTp 10−5 cutoff Strains containing
hopAY1 HM641785 Pmo ggaactttttcttgcccgctaccac Cysteine protease Pmp, Pan, Pae, Pmo, Pph
hopAZ1 HM641786 Pan ggaaccgcttttcaactgattgccac Hypothetical (Pseudomonas) Pan, Pma, Ptt, Cit7, Pla 107, Pta, Pae, Pmo, Pgy
hopBA1 HM641787 Ptt ggaactgacaagccagtatgagccac Hypothetical (Erwinia) Ptt, Pja
hopBB1 HM641788 Pmo ggaacttcaatagggtgtcgtaccac C-terminus similar to hopF2 Pmp, Pae
hopBC1 HM641789 Ptt ggaaccgtcttcgggacacggccac Hypothetical (Erwinia) Ptt, Pja, Pac
hopBD1 HM641790 Pla 107 ggaaccgatcgaggggttctgaccac Hypothetical (Acidovorax) Pla 106, Pma, Pla 107, Pmo
hopBE1 HM641791 Pac ggaacccgatccatccgccgagccac Hypothetical (Burkholderia) Pac
hopBF1 HM641792 Ptt ggaacccaactcactcaattcatcac Hypothetical (Acidovorax) Por, Ptt
hopBG1 HM641793 Pma ggaaccgaatccatctcgagggccac Hypotheical (Bradyrhizobium) Pma

The characteristics of representative alleles for each new hop are listed. During analysis of this data, another group identified HopAY1 [96]. We include this TTE family in the table but not when describing the total number of TTE families discovered. BLASTp 10−5 cutoff column indicates the best hit for each allele in the NCBI NR database. The strains containing column indicates which of the sequence strains also contain alleles of these hop families. The translocation of representative alleles was verified, but consult Dataset S9 for translocation data for alleles from other genomes.