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. 2011 Jul 14;6(7):e22136. doi: 10.1371/journal.pone.0022136

Table 1. Total number of similar amino acid sites between the different groups of sarcopterygians which have been affected by positive-destabilizing during cladogenesis.

A-L A-C L-C A-L-C
pK' 117 26 6 0
Ra 157 19 7 0
an 2 17 0 17
Hp 14 9 0 0
H 16 0 1 3
Ko 62 2 3 2
F 64 13 0 5
Ht 27 2 0 0
P 15 16 0 3

Abbreviations: A- Amphibians, L- Lungfishes, C- Coelacanths; (pK') - Equilibrium constant (ionization of COOH), (Ra) - Solvent accessible reduction ratio, (an) - Power to be at the N-terminal, (Hp) - Surrounding hydrophobicity, (H) - Hydropathy, (Ko) - Compressibility, (F) - Mean r.m.s. fluctuation displacement, (Ht) - Thermodynamic transfer hydrophobicity, (P) – Polarity. The table shows clearly that the total number of amino acid sites commonly affected by positive selection is much higher between amphibians and lungfishes (A-L) when compared to the other groupings. Hence we come to a conclusion that amphibians and lungfishes are very closely related. Also pK' and Ra have affected the genes to a maximum extent unlike other properties. Please note that only the major amino acid properties are listed in the table (Refer to Table S2 for all the details).