Table 1. Total number of similar amino acid sites between the different groups of sarcopterygians which have been affected by positive-destabilizing during cladogenesis.
A-L | A-C | L-C | A-L-C | |
pK' | 117 | 26 | 6 | 0 |
Ra | 157 | 19 | 7 | 0 |
an | 2 | 17 | 0 | 17 |
Hp | 14 | 9 | 0 | 0 |
H | 16 | 0 | 1 | 3 |
Ko | 62 | 2 | 3 | 2 |
F | 64 | 13 | 0 | 5 |
Ht | 27 | 2 | 0 | 0 |
P | 15 | 16 | 0 | 3 |
Abbreviations: A- Amphibians, L- Lungfishes, C- Coelacanths; (pK') - Equilibrium constant (ionization of COOH), (Ra) - Solvent accessible reduction ratio, (an) - Power to be at the N-terminal, (Hp) - Surrounding hydrophobicity, (H) - Hydropathy, (Ko) - Compressibility, (F) - Mean r.m.s. fluctuation displacement, (Ht) - Thermodynamic transfer hydrophobicity, (P) – Polarity. The table shows clearly that the total number of amino acid sites commonly affected by positive selection is much higher between amphibians and lungfishes (A-L) when compared to the other groupings. Hence we come to a conclusion that amphibians and lungfishes are very closely related. Also pK' and Ra have affected the genes to a maximum extent unlike other properties. Please note that only the major amino acid properties are listed in the table (Refer to Table S2 for all the details).