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. 2011 Jul 14;6(7):e22038. doi: 10.1371/journal.pone.0022038

Table 7. List of Species.

Species description Species Name Database term Initial Amount
Native protein NatP CHEBI:36080 17600
Misfolded protein MisP CHEBI:36080 0
Aggregated protein AggP CHEBI:36080 0
MisP bound to Hsp70 Hsp70_MisP IPR001023, CHEBI:36080 470
MisP bound to Hsp90 Hsp90_MisP IPR001404, CHEBI:36080 410
Hsp70 Hsp70 IPR001023 1400
Hsp90 Hsp90 IPR001404 1850
Damaged Hsp70 Hsp70_dam IPR001023 0
Damaged Hsp90 Hsp90_dam IPR001404 0
Hsp70 bound to proteasome Hsp70_Proteasome IPR001023, GO:0000502 0
Hsp90 bound to proteasome Hsp90_Proteasome IPR001404 GO:0000502 0
Hsf1 Hsf1 Q00613 5
Hsf1 bound to Hsp90 Hsf1_Hsp90 Q00613, IPR001404 95
Hsf1 dimers Hsf1_Hsf1 Q00613 0
Hsf1 trimers Hsf1_Hsf1_Hsf1 Q00613 0
Phosphorylated Hsf1 trimers Hsf1_Hsf1_Hsf1_P Q00613 0
Hsp70 heat shock element HSEHsp70 SBO:0000369 2
Hsp90 heat shock element HSEHsp90 SBO:0000369 2
Phosphorylated Hsf1 bound to HSEHsp70 HSEHsp70_Hsf1_Hsf1_Hsf1_P SBO:0000369, Q00613 0
Unphosphorylated Hsf1 bound to HSEHsp70 HSEHsp70_Hsf1_Hsf1_Hsf1 SBO:0000369, Q00613 0
Phosphorylated Hsf1 bound to HSEHsp90 HSEHsp90_Hsf1_Hsf1_Hsf1_P SBO:0000369, Q00613 0
Unphosphorylated Hsf1 bound to HSEHsp90 HSEHsp90_Hsf1_Hsf1_Hsf1 SBO:0000369, Q00613 0
Hsp70 client proteins Hsp70Client CHEBI:36080 490
Hsp90 client proteins Hsp90Client CHEBI:36080 590
Hsp70 bound to clients Hsp70_Hsp70Client IPR001023, CHEBI:36080 10
Hsp90 bound to clients Hsp90_Hsp90Client IPR001404, CHEBI:36080 10
Akt (protein kinase B) Akt P31749 340
Akt bound to Hsp90 Akt_Hsp90 P31749, IPR001404 30
Carboxy terminus of Hsp70-interacting protein CHIP Q9UNE7 255
Akt bound to CHIP/Hsp90 complex Akt_CHIP_Hsp90 P31749, Q9UNE7, IPR001404 80
Akt bound to proteasome Akt_Proteasome P31749, GO:0000502 0
Proteasome Proteasome GO:0000502 500
MisP bound to proteasome MisP_Proteasome CHEBI:36080,GO:0000502 0
Aggregated protein bound to proteasome AggP_Proteasome CHEBI:36080, GO:0000502 0
Sequestered aggregated protein SeqAggP CHEBI:36080 0
Phosphatase Mkp1 (DUSP1) Mkp1 P28562 0
Phosphorylated Mkp1 Mkp1_P P28562 100
Mkp1 bound to proteasome Mkp1_Proteasome P28562, GO:0000502 0
Phosphatase for Hsf1 Ppx GO:0008287 0
PPX bound to Hsp70 Hsp70_Ppx IPR001023, GO:0008287 100
JNK (MAPK8) Jnk P45983 100
Phosphorylated JNK Jnk_P P45983 0
p38MAPK (MAPK14) p38 Q16539 100
Phosphorylated p38MAPK p38_P Q16539 0
Protein kinase C Pkc IPR015745 100
Reactive oxygen species ROS CHEBI:26523 10
Adenosine triphosphate ATP CHEBI:15422 10000
Adenosine diphosphate ADP CHEBI:16761 1000

IPR: InterPro [48].

GO: Gene ontology [49].

CHEBI: Chemical Entities of Biological Interest database [50].

P and Q: Uniprot [51].

SBO: Systems Biology Ontology [52].