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. 2011 May 19;286(28):25265–25273. doi: 10.1074/jbc.M111.226936

TABLE 1.

Data collection and refinement statistics

Statistics in parenthesis are for the highest resolution bin. DTPA, diethylenetiamine pentaacetic acid GdIII.

Data set Native M102RTrypsn DTPA derivative (M102RTrypsin) R167ETrypsin
Space group P212121 I422 I422 P41212
Unit cell (Å, °) a = 38.1, b = 119.532, c = 231.725 a = 101.1, c = 275.6 a = 101.5, c = 275.6 a = 55.3, c = 282.5
Resolution (Å) 40-2.8 (2.8-2.95) 40-2.2 (2.24-2.2) 40-2.5 (2.64-2.5) 40-1.8 (1.9-1.8)
Completeness (%) 99.0 (98.2) 99.3 (99.5) 100.0 (100.0) 94.5 (75.3)
Redundancy 7.8 (7.4) 7.8 (7.7) 12.5 (11.7) 7.0 (2.7)
I (mean (S.D.)) 18.7 (6.5) 27.0 (6.0) 19.4 (4.2) 19.3 (2.8)
Rsym 0.077 (0.277) 0.060 (0.366) 0.084 (0.557) 0.061 (0.355)
Wilson B factor (Å2) 39.6 36.0 56.4 15.7

Model and refinement data
    Resolution (Å) 40-2.8 (2.9-2.8) 40-2.2 (2.2-2.28) 40-1.8 (1.8-1.86)
    Unique reflections 26120 (2734) 35308 (3097) 39399 (2492)
    Rcryst (%) 22.5 (33.9) 19.3 (24.3) 18.0 (23.8)
    Rfree (%, 5% of data) 30.1 (46.6) 22.2 (32.0) 22.1 (30.0)
    Contents of model
        Residues (1–x) A1–210, B1–212, C4–212, D3–210 A1–102, A112–213, B1–107, B109–214 A1–102, A111–213, B1–101, B112–214
        Waters - 190 323
        Other - 10 (SO4 × 2) -
        Atoms total 6610 3505 3542
    Average B-factor (Å2)
        Protein/waters 38.1 40.5/64.2 17.9/26.1
    RMSD
        Bond lengths (Å)/angles (°) 0.008/1.19 0.007/0.978 0.010/1.18
    MolProbity statistics
        Ramachandran
            Favored/outliers (%) 90.3/0.24 97.3/0.0 99.0/0.0
        Rotamer outliers (%) 4.7 0.87 1.5
        Clash scorea 24.1 (81st percentile) 5.6 (98th percentile) 45.6 (97th percentile)
        Overall scorea 2.92 (71st percentile) 1.43 (99th percentile) 1.36 (97th percentile)

a The scores are ranked according to structures of similar resolution as formulated in MolProbity.