Table 2.
Comparison of N50 lengths in assembly of single-end reads when depth of coverage was 70× and BCER was 0.6%
| Seq | RL (bp) | SS | VC | Eu | Ed | Ve | AB | SO |
|---|---|---|---|---|---|---|---|---|
| D.mel | 35 | 6717 | 2215 | 9064 | 4917 | 4085 | 4087 | 4145 |
| H.inf | 25 558 | 2669 | 26 491 | 19 231 | 17 988 | 18 547 | 22 036 | |
| T.bru | 3264 | 963 | 3528 | 2934 | 2667 | 3014 | 3504 | |
| H.sap-1 | 1177 | 653 | 1393 | 1053 | 910 | 961 | 1202 | |
| D.mel | 75 | 28 646 | 3683 | 23 676 | 22 695 | 22 679 | 22 673 | 25 115 |
| H.inf | 46 069 | 3235 | 38 667 | 38 724 | 38 715 | 38 361 | 42 778 | |
| T.bru | 8205 | 2682 | 9733 | 10 847 | 10 682 | 10 814 | 11 108 | |
| H.sap-1 | 2706 | 691 | 2169 | 4315 | 3810 | 3358 | 5227 |
RL, read length; Seq, benchmark sequence; SS, SSAKE; VC, VCAKE; Eu, Euler-sr; Ed, Edena; Ve, Velvet; AB, ABySS; SO, SOAPdenovo.