Table 5.

Comparison of sequence coverage and assembly error rates in assembly of paired-end reads with various GC contents and depths of coverage (BCER=0.6%)

	RL (bp)	Seq (GC%)	DC	SS	Eu	Ve	AB	SO
SC (%)	35	D.mel (36.90)	30×	77.05	71.12	78.75	79.53	78.85
			50×	79.16	71.98	79.03	79.65	78.52
			70×	79.11	70.61	78.95	79.71	78.92
		T.bru (44.38)	30×	72.69	71.07	71.37	73.46	70.07
			50×	72.50	71.67	71.50	73.11	70.34
			70×	73.59	69.08	71.32	73.27	70.78
	75	D.mel (36.90)	30×	79.77	71.31	79.18	81.00	80.20
			50×	79.88	70.17	78.79	80.82	80.36
			70×	79.73	69.54	78.43	81.59	79.69
		T.bru (44.38)	30×	77.19	71.56	76.52	81.97	76.25
			50×	78.29	70.12	76.66	81.97	76.54
			70×	78.49	70.86	78.17	81.10	76.55
AER (%)	35	D.mel (36.90)	30×	0.33	0.54	0.17	0.14	0.28
			50×	0.32	0.52	0.19	0.16	0.29
			70×	0.34	0.44	0.21	0.19	0.33
		T.bru (44.38)	30×	0.30	1.30	0.25	0.19	0.21
			50×	0.34	0.87	0.22	0.17	0.23
			70×	0.40	0.73	0.21	0.21	0.20
	75	D.mel (36.90)	30×	0.47	0.37	0.27	0.13	0.35
			50×	0.41	0.48	0.21	0.14	0.42
			70×	0.62	0.38	0.23	0.16	0.35
		T.bru (44.38)	30×	0.52	0.79	0.55	0.45	0.39
			50×	0.52	0.61	0.57	0.39	0.43
			70×	0.61	0.72	0.61	0.42	0.42