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. 2011 Jun 11;27(15):2076–2082. doi: 10.1093/bioinformatics/btr350

Fig. 3.

Fig. 3.

As in Figure 2. However, the positives are defined as those predicted template structures with a TM score > 0.5 to the query structure by TM align. Three sets of results from top to bottom are shown: all pairs, excluding the templates within the same family, and excluding those within the same family and superfamily.